CI01000027_08389687_08404869


Basic Information

Item Value
gene id CI01000027_08389687_08404869
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8389522 ~ 8406117 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_08389687_08404869.mRNA
CCATAAAGACTCCGGTGCAGATAAGTGGCTCTGGATTCAGGCAGCGGACACACTAACTGCAGGTTGTCTGACAGGTGGAGCTGAACAGTCTCAGTTATTACCCACAGTTCTTAGTTCAGTACTCATCAGGTGTCATCAAGAGCGCTACTACCTGATATCACCCCCATGAGAATCATCAAATTCACACCAGAATACACTTTCATGTCTTCTGGTTCTTCCTCCATCATTTTCTTTAGCCCTCTCTCACTTTCACTGGCTCTGTTTCTCTGGCTGGTTGTCAGAGCTCAGAGTGAGAGGGCATTAGAGAAATGTATTCTGGGAGATGGAATGAACGGATTTCATCTTAGAACTGCTAAAAATGGAACAATCTGGTTGCGTATTCTTGAATATGAATTGCGACTATCAGTGAAAGATGGGGAGCATCTGGAGAAGAGTTCTCTTCCTGCTAGGAAATCCGTCAAAGGTCACTGCAGGCGTGTCAAACATGGACGCTTGGCTGTGGTTGTGGCTAAAAAGACAAAGAGATATGGAGAACAAGAAGAAGCAACCACAAAAATATTGTGTGCATTACAGCCCAAAGCGATAAATGAGGAAACTATGAGTGAACTACAACGGACATCGGACGTCACCGGTTCAACTGTCAGAGCGAATGGCTCTAAACAAGAACCTGTTGATCACGAATGTGGCGAAAATGGCCGCGTGCCCCTGACCCGTGCCGACAAACTGGAGAGGATGGCCGAGCATCTTCACAGCAGCACGCTGTCTGCGTCTGGGGCCAACCAGCCCATCCCTTTCCTCACGCTGGAACAGAAGGCTGCCTTCGTCTTCGTCCTCCTCCTCTTCATCTTTCTGGGGCTGCTGATCGTGCGCTGCTTCCGAATCCTTCTGGATCCGTACAGCAGCATGCCAAGTTCCACATGGACAGACTATATGGAAAAAGACACATTCGACTACCGCATTGCCTGAGCTGCTAGCCAGATTTCAGGCTAGGAGACATGCGATGATTACCTCACACGCGCGCACACACACACACACACACACACACACACACGCCAACACACACAACCACCACCACACCTCCTCCACCTCAGAGCCGACTGTATCCCTCAAGTGTTGTTGTTTCGTGATGGTGGTTTTGTGTACTTGTGGGTCTGGATTTTCCATTTGAAAACTGCACTTAAACCCACTTTCATGTCTCGTGTTCTGACAGGGTTTTTCAACTCATAGCTTCCACCACTGATGTCACGTTCGGCATGGCTGAAAAGTCTTAGCGATGAATCTTTTATGTTCGAAACCAGCCAAATAGCTTTATTACAGACAAACAATATGGTTAATTATTTTCTATGTCCAAAGAATGACAAATTAACAATTCCGAAATTGGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_08389687_08404869.mRNA False 1384 mRNA 0.47 6 8389522 8405287

Neighbor

gene id symbol gene type direction distance location
CI01000027_08340304_08385380 SEMA6E, SEMA6C coding upstream 4142 8340304 ~ 8385380 (+)
CI01000027_08276000_08284306 NA coding upstream 104994 8275799 ~ 8292755 (+)
CI01000027_08255251_08264629 NA coding upstream 124625 8255073 ~ 8264897 (+)
CI01000027_08078236_08079316 LYSMD1 coding upstream 309572 8078236 ~ 8079950 (+)
CI01000027_08064283_08072145 TMOD4 coding upstream 317273 8061684 ~ 8072249 (+)
CI01000027_08412094_08418277 TMEM79B coding downstream 4876 8410163 ~ 8418633 (+)
CI01000027_08457984_08480177 PEAR1 coding downstream 51826 8457113 ~ 8480827 (+)
CI01000027_08509097_08512799 MC2R coding downstream 103810 8509097 ~ 8514407 (+)
CI01000027_08530476_08532249 FAM210AB coding downstream 123197 8528484 ~ 8532996 (+)
CI01000027_08555278_08567675 NA coding downstream 149705 8554992 ~ 8567869 (+)
G142661 NA non-coding upstream 166127 8223184 ~ 8223395 (+)
G142660 NA non-coding upstream 166374 8222597 ~ 8223148 (+)
G142651 NA non-coding upstream 177102 8212200 ~ 8212420 (+)
G142625 NA non-coding upstream 201381 8186844 ~ 8188141 (+)
G142694 NA non-coding downstream 145904 8551191 ~ 8559581 (+)
G142720 NA non-coding downstream 201070 8606357 ~ 8606629 (+)
G142721 NA non-coding downstream 208828 8614115 ~ 8614407 (+)
G142722 NA non-coding downstream 209393 8614680 ~ 8614885 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 357481 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 437580 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 917808 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 1431755 6951132 ~ 6957767 (+)
G143033 NA other downstream 1323528 9728815 ~ 9729551 (+)
G142668 NA non-coding upstream 5601 8397526 ~ 8397784 (+)

Expression


Co-expression Network