CI01000027_08921841_08923382 (SCXB)


Basic Information

Item Value
gene id CI01000027_08921841_08923382
gene name SCXB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8921442 ~ 8924400 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_08921841_08923382.mRNA
CTATAAATCCAAGGCATAAGGAAACGCTCAGCTGAAATCACACGTGGAACTGAAGGATCTGGAGCTCACAAACCCATTTACACACACATATGCGCGAACATACAGAGTCTGGGAGGCGGCTTGGCATGCTGTTAGCCTAAATAACTGATGACAGTGGAGAGAAGAGCATTTCTTATGAATGAGTGAGTCAGAAGTGGCATCGCTGGATTGGTTGGATCCTTCAAACAAAACTGGTTTCAGGAGCTTGGACTCAAACGACACCATAGTGTGTCCTGGTGCCTTTGTGTACGATTAGAAATAGGGACTGAGTTCATTCTTGTGTTTGTGTAGACTAGGAATACTCTGCGCTCTGGTGCGAGGTTGAAAACCAAGGTCCGGGTGTCCTGTAAGGTGCTGAGCATGTCTTTTGCAATGGTGCGACCAACCCCAGGTCATTTCTTGTGCTCTGAGATCAGCATGCATTCCGAGGATGACGACAACGGCAGCGAGGGTTCTGGATCCGAAGACAAGTCCTTCCGTATGGCCAGCCACAACTACGGTGCCTTTAAGTTGGGTGCTCGCAAAAAGAGGTATAGTTGCCGACCGGTGGCAGTTCCTACTGAGATCCGTCCACAGATCGTTGAGGTACGGCAGCGGAACGCCGCAAATGCCCGAGAGCGGGATCGCACGAACAGTGTGAACACAGCGTTCACCGCTCTGAGGACACTGATACCCACCGAACCAGCCGACAGGAAGCTGTCCAAGATTGAGACGTTGCGGTTGGCCTCCAGCTACATCTCGCACCTGGGGAACGTCTTGCTAGTTGGAGAGGAGTGTGGAGATGGCCAGCCCTGTCTCAGGAGCTCTGGAGCCTTGTATCATCACCACCACAATCTCCCGAAGAGCTCCACACCCAGCCCGGACTCAGAAAACTCACAGCCCAGACAGATCTGCACCTTCTGCCTCAGTAACCAGAGACGGCTGTGCACTAGAAACATCTGGTCTATTCCCCTGACAACATGAACGTCTTCCTGCGCAGTTCATGTATGTCCTGAGTTCCACCAAAGCCTTCAACACCCTCATTATCATTACGAGGACTAATCCTGAACAGACTCTTTAAACACTACAGTTTAATGAAAACACTCTAGATTCATCCTTTCATCTAGTATTTCATATGCTGTTACTGAAATAATATGGTTGTATTTGATGGGCCATAGAGGATTATTTATTTATTAATAAAAATTTCATCGGCTGCGACCAATTAAGGAGAGCTGATGAACTCAAACTTACAATTTGTCAGTGTTTAATGCCAAACATTTAAAATACTTTGTTTTATCAGCTGAAAGCACTTATTTTTATGTCATTTTATTGAAGATTCATTTTTTCATATATATTACCACAGGTAAGGCTCAAGTACCCCGTCATAAACACCAAAACAGAAAATTAACTTACTGCAGTGAAAAAAATATTTTGAAACAATTTTCAGTCAGAAATTGCTAGTAAATTTCACAAATAATTGCAAAGAAATGGCAAGCAACACATTTCATCAAACAAGGAATTTTGAAGTAGAAAGTCTAAAAAAGTATTTTCTTCTAAAATGTACTCCAGTAATATTTGAAACTCAAAATAATATTTTTTTTATTACATCATTAAAAAAAGAAAAAGAGGCTTGGAACGCTGCTCATTCAAAAAAAATTAAAGAACTGAAACTAACAGCTGTATAATTAGCATTATCATCAATATTATTAAAATGAAATCCACACAAACTGAGAAAACTTTCACTTTTTGTTTGTTTTTAAAGCTCAATATGTTAAGCAAATATATATATATATATACATTGACAAACCTAATTACAATGTAATAATGTATACATGTAATAATGTAATAACAATGTAATATATATATACATATATACATTGTTATATTACATTGTTATTACATTTTATATATATATATATATATATATATATATATATATATATATACACCATTAAATTACATTATATATATGTAATAACAATGTAATTTGCCCCGGGAGAAA

Function

symbol description
scxb Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within tendon formation. Is expressed in adductor mandibulae; caudal fin; extraocular musculature; sternohyoid; and vertical myoseptum. Orthologous to human SCX (scleraxis bHLH transcription factor).

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_08921841_08923382.mRNA True 2020 mRNA 0.39 2 8921442 8924400

Neighbor

gene id symbol gene type direction distance location
CI01000027_08555278_08567675 NA coding upstream 353573 8554992 ~ 8567869 (+)
CI01000027_08530476_08532249 FAM210AB coding upstream 388446 8528484 ~ 8532996 (+)
CI01000027_08509097_08512799 MC2R coding upstream 407537 8509097 ~ 8514407 (+)
CI01000027_08457984_08480177 PEAR1 coding upstream 440615 8457113 ~ 8480827 (+)
CI01000027_08412094_08418277 TMEM79B coding upstream 502809 8410163 ~ 8418633 (+)
CI01000027_08990622_08995041 NDRG1B coding downstream 66100 8990500 ~ 8995662 (+)
CI01000027_09071095_09071880 NA coding downstream 146695 9071095 ~ 9071889 (+)
CI01000027_09076261_09076773 NA coding downstream 151070 9075470 ~ 9077585 (+)
CI01000027_09136426_09140323 NA coding downstream 211036 9135436 ~ 9140323 (+)
CI01000027_09203231_09208317 WNT4B coding downstream 278602 9203002 ~ 9208366 (+)
G142885 NA non-coding upstream 10144 8911069 ~ 8911298 (+)
G142849 NA non-coding upstream 46846 8870743 ~ 8874596 (+)
G142848 NA non-coding upstream 56942 8860743 ~ 8864500 (+)
G142843 NA non-coding upstream 103218 8817931 ~ 8818224 (+)
G142842 NA non-coding upstream 104423 8816718 ~ 8817019 (+)
G142862 NA non-coding downstream 32803 8957203 ~ 8964361 (+)
G142870 NA non-coding downstream 71780 8996180 ~ 8997124 (+)
G142903 NA non-coding downstream 74282 8998682 ~ 8998967 (+)
G142906 NA non-coding downstream 143580 9067980 ~ 9069720 (+)
G142927 NA non-coding downstream 170029 9094429 ~ 9095960 (+)
CI01000027_08255251_08264629 NA other upstream 660616 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 889401 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 969500 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 1449728 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 1963675 6951132 ~ 6957767 (+)
G143033 NA other downstream 804415 9728815 ~ 9729551 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010802 NA non-coding NC_007127.7 CM002900.2 31385083 ~ 31407686 (-)