G142927


Basic Information

Item Value
gene id G142927
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9094429 ~ 9095960 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU162385
TGTAAGCATGTTTAATTAATGGAGTTAACATGGAAAATAAACAACACAAAACAAACACTTTTAAAATGAAAGTTAGCCAGTAAGAGGTCCTCTGTTGCCACCTGCTGGTTAAAATAGTAATTTTGTCATACTACTCACTAATATTGTTCTATAATTCATATTTAGACTTAATATAATTATTTTAACATTTACTATCAATTTTTTGTCAAAATTCATCACTACATTTCCATTAGAGTATTAGTTTTAACAGTTGTGCCACATTGAGTAAAATGAAACCTGAAAATTATGTTTTACTGAGATTTGCAGAAAACATCTTTACCCATCATGTATTTCAAATACTGAATTTACAAGAAAATGTCTGTGTTTGTGTTTGTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTAAGCATGCTTAGTATGTATCAAGTATTATTGTTTAAGATCATAGCTGTTCACCTATGATTTAAGTGGTTACATTCTTGCTAAATAAACCTTAATTCCTTTTTACACATATGTGCTTAAAGGCCTTAAATGCTTGAACCCCGATAAATGCTGCTTGCAGCTTTAATTTATTATTAATATTCTAAACGAAGACAATTATTTTAGAATTCAGAAAAGACACTATACCTACATGTAACATTAATTTGTCACCCATCTGTGTGTATAAAATATGTTTCATTTTTTTATTGCTTGTTTTATTTCACAATAATGCATAACTGTACTGAATAATGACTGACAGAGAGCTCATGTCATGTCAATTGTTTGCCATTGTTTCTCTGATCCAGTCCAGGTAGTTCTGCACTTTTGTGTAGAAACTTTTAGAGTATTTATTACCACATTTAGAAGAACCCCATGACACAATGCCCCTCACCTCGTAGGGTTGCTCTTTAGATCCATAGCCCAACATGGGGAAGAACAGAGGACTTCCACCATCACCTGCGCAACTATCAACCCTTTTAACATCATCTCCAGCACAGAACATGTTTTCAGTGACAGGCACATTCCCTGGATTACACTTGTCAGGAGGATATTCCTGAACATGCCCATAACGTAAAATTTTACTTAAGCCCCGCTCAAACTTTCCAAAACCTGATATTGTACCCATTGTGCCCTCCATTACAGGTTCATGTGTTTTGTTTGGCAGACACACTGGCCTGATGTTTGGACCGAGTGGCACCCTGGCAGACATTTTGATCAGTGCAATGTCATTTTCAAAGTTGTTTAGTTTTTTACCTTCACCAACTCTAGTATAATTTGGGTGAATTATGATCTTCTCTTTCTCCATAATGACTGCTTTTTTGTCTTTACTATCAATTATTCCCCCTAACCAATTCATGCTGGTGTTTTCATAACTATCTACTAAATGAGCAGCTGTTAGAGCCCAGTAATCACTGATCAGAGACGCACCACCGCTGGAATATGAATCATGTAAGAGCTGCCAGGGAATCTGCCCAGGTCTGGCTGGATTCCCACCAAAGACTCTGGCACCAAAAGAGACCTCTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162385 True 1509 lncRNA 0.36 2 9094429 9095960

Neighbor

gene id symbol gene type direction distance location
CI01000027_09076261_09076773 NA coding upstream 16844 9075470 ~ 9077585 (+)
CI01000027_09071095_09071880 NA coding upstream 22540 9071095 ~ 9071889 (+)
CI01000027_08990622_08995041 NDRG1B coding upstream 98767 8990500 ~ 8995662 (+)
CI01000027_08921841_08923382 SCXB coding upstream 170029 8921442 ~ 8924400 (+)
CI01000027_08555278_08567675 NA coding upstream 526560 8554992 ~ 8567869 (+)
CI01000027_09136426_09140323 NA coding downstream 39476 9135436 ~ 9140323 (+)
CI01000027_09203231_09208317 WNT4B coding downstream 107042 9203002 ~ 9208366 (+)
CI01000027_09220776_09224935 MLF2 coding downstream 124680 9220640 ~ 9225359 (+)
CI01000027_09235085_09240022 NA coding downstream 139125 9235085 ~ 9240022 (+)
CI01000027_09243269_09246171 NA coding downstream 147188 9243148 ~ 9246915 (+)
G142906 NA non-coding upstream 24709 9067980 ~ 9069720 (+)
G142903 NA non-coding upstream 95462 8998682 ~ 8998967 (+)
G142870 NA non-coding upstream 97305 8996180 ~ 8997124 (+)
G142862 NA non-coding upstream 130068 8957203 ~ 8964361 (+)
G142885 NA non-coding upstream 183131 8911069 ~ 8911298 (+)
G142923 NA non-coding downstream 129 9096089 ~ 9099816 (+)
G142911 NA non-coding downstream 7552 9103512 ~ 9111754 (+)
G142920 NA non-coding downstream 9274 9105234 ~ 9121557 (+)
G142940 NA non-coding downstream 13292 9109252 ~ 9123257 (+)
G142974 NA non-coding downstream 16496 9112456 ~ 9116280 (+)
CI01000027_08255251_08264629 NA other upstream 833603 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 1062388 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 1142487 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 1622715 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 2136662 6951132 ~ 6957767 (+)
G143033 NA other downstream 632855 9728815 ~ 9729551 (+)

Expression


Co-expression Network