Gene
RNA
| Item | Value |
|---|---|
| gene id | G142920 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 9105234 ~ 9121557 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU162378 | True | 1409 | lncRNA | 0.39 | 2 | 9105234 | 9121557 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_09076261_09076773 | NA | coding | upstream | 27649 | 9075470 ~ 9077585 (+) |
| CI01000027_09071095_09071880 | NA | coding | upstream | 33345 | 9071095 ~ 9071889 (+) |
| CI01000027_08990622_08995041 | NDRG1B | coding | upstream | 109572 | 8990500 ~ 8995662 (+) |
| CI01000027_08921841_08923382 | SCXB | coding | upstream | 180834 | 8921442 ~ 8924400 (+) |
| CI01000027_08555278_08567675 | NA | coding | upstream | 537365 | 8554992 ~ 8567869 (+) |
| CI01000027_09136426_09140323 | NA | coding | downstream | 13879 | 9135436 ~ 9140323 (+) |
| CI01000027_09203231_09208317 | WNT4B | coding | downstream | 81445 | 9203002 ~ 9208366 (+) |
| CI01000027_09220776_09224935 | MLF2 | coding | downstream | 99083 | 9220640 ~ 9225359 (+) |
| CI01000027_09235085_09240022 | NA | coding | downstream | 113528 | 9235085 ~ 9240022 (+) |
| CI01000027_09243269_09246171 | NA | coding | downstream | 121591 | 9243148 ~ 9246915 (+) |
| G142923 | NA | non-coding | upstream | 5418 | 9096089 ~ 9099816 (+) |
| G142927 | NA | non-coding | upstream | 9274 | 9094429 ~ 9095960 (+) |
| G142906 | NA | non-coding | upstream | 35514 | 9067980 ~ 9069720 (+) |
| G142903 | NA | non-coding | upstream | 106267 | 8998682 ~ 8998967 (+) |
| G142870 | NA | non-coding | upstream | 108110 | 8996180 ~ 8997124 (+) |
| G142978 | NA | non-coding | downstream | 12304 | 9133861 ~ 9134120 (+) |
| G142979 | NA | non-coding | downstream | 13259 | 9134816 ~ 9135305 (+) |
| G142918 | NA | non-coding | downstream | 29364 | 9150921 ~ 9152775 (+) |
| G142929 | NA | non-coding | downstream | 56679 | 9178236 ~ 9178527 (+) |
| G142907 | NA | non-coding | downstream | 87030 | 9208587 ~ 9266823 (+) |
| CI01000027_08255251_08264629 | NA | other | upstream | 844408 | 8255073 ~ 8264897 (+) |
| CI01000027_08026500_08029412 | ENSAB, ENSA | other | upstream | 1073193 | 8025788 ~ 8032041 (+) |
| CI01000027_07947743_07951397 | NA | other | upstream | 1153292 | 7947657 ~ 7951942 (+) |
| CI01000027_07469157_07471720 | NA | other | upstream | 1633520 | 7468964 ~ 7471999 (+) |
| CI01000027_06951132_06956691 | GLIPR2, GLIPR2L | other | upstream | 2147467 | 6951132 ~ 6957767 (+) |
| G143033 | NA | other | downstream | 607258 | 9728815 ~ 9729551 (+) |
