G142978


Basic Information

Item Value
gene id G142978
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9133861 ~ 9134120 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU162444
TCAGAAAATTAGAATATTACTTAAGACCAATACAAAGAAAGGATTTTTAGAAATCTTGGCCAACTGAAAAGTATGAACATGAAAAGTATGAGCATGTACATCACTCAATACTTAGTTGGGGCTCCTTTTGCCTGAATTACTGCAGCAATGCGGCGTGGCATGGAGTCGATCAGTCTGTGGCACTGCTCAGGTGTTATAAGAGCCCAGGTTGCTCTGATAGTGGCCTTCAGCTCTTCTGCATTGTTGGGTCTGGCATAACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162444 True 260 lncRNA 0.43 1 9133861 9134120

Neighbor

gene id symbol gene type direction distance location
CI01000027_09076261_09076773 NA coding upstream 56276 9075470 ~ 9077585 (+)
CI01000027_09071095_09071880 NA coding upstream 61972 9071095 ~ 9071889 (+)
CI01000027_08990622_08995041 NDRG1B coding upstream 138199 8990500 ~ 8995662 (+)
CI01000027_08921841_08923382 SCXB coding upstream 209461 8921442 ~ 8924400 (+)
CI01000027_08555278_08567675 NA coding upstream 565992 8554992 ~ 8567869 (+)
CI01000027_09136426_09140323 NA coding downstream 1316 9135436 ~ 9140323 (+)
CI01000027_09203231_09208317 WNT4B coding downstream 68882 9203002 ~ 9208366 (+)
CI01000027_09220776_09224935 MLF2 coding downstream 86520 9220640 ~ 9225359 (+)
CI01000027_09235085_09240022 NA coding downstream 100965 9235085 ~ 9240022 (+)
CI01000027_09243269_09246171 NA coding downstream 109028 9243148 ~ 9246915 (+)
G142940 NA non-coding upstream 10604 9109252 ~ 9123257 (+)
G142920 NA non-coding upstream 12304 9105234 ~ 9121557 (+)
G142974 NA non-coding upstream 17581 9112456 ~ 9116280 (+)
G142911 NA non-coding upstream 22107 9103512 ~ 9111754 (+)
G142923 NA non-coding upstream 34045 9096089 ~ 9099816 (+)
G142979 NA non-coding downstream 696 9134816 ~ 9135305 (+)
G142918 NA non-coding downstream 16801 9150921 ~ 9152775 (+)
G142929 NA non-coding downstream 44116 9178236 ~ 9178527 (+)
G142907 NA non-coding downstream 74467 9208587 ~ 9266823 (+)
G142941 NA non-coding downstream 148304 9282424 ~ 9283057 (+)
CI01000027_08255251_08264629 NA other upstream 873035 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 1101820 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 1181919 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 1662147 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 2176094 6951132 ~ 6957767 (+)
G143033 NA other downstream 594695 9728815 ~ 9729551 (+)

Expression


Co-expression Network