Gene
RNA
| Item | Value |
|---|---|
| gene id | G142918 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 9150921 ~ 9152775 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| Tc1-like transporase |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU162376 | True | 1235 | lncRNA | 0.34 | 2 | 9150921 | 9152775 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_09136426_09140323 | NA | coding | upstream | 10598 | 9135436 ~ 9140323 (+) |
| CI01000027_09076261_09076773 | NA | coding | upstream | 73336 | 9075470 ~ 9077585 (+) |
| CI01000027_09071095_09071880 | NA | coding | upstream | 79032 | 9071095 ~ 9071889 (+) |
| CI01000027_08990622_08995041 | NDRG1B | coding | upstream | 155259 | 8990500 ~ 8995662 (+) |
| CI01000027_08921841_08923382 | SCXB | coding | upstream | 226521 | 8921442 ~ 8924400 (+) |
| CI01000027_09203231_09208317 | WNT4B | coding | downstream | 50227 | 9203002 ~ 9208366 (+) |
| CI01000027_09220776_09224935 | MLF2 | coding | downstream | 67865 | 9220640 ~ 9225359 (+) |
| CI01000027_09235085_09240022 | NA | coding | downstream | 82310 | 9235085 ~ 9240022 (+) |
| CI01000027_09243269_09246171 | NA | coding | downstream | 90373 | 9243148 ~ 9246915 (+) |
| CI01000027_09294505_09295818 | RPS9.L, BRAFLDRAFT_126921, RPS9 | coding | downstream | 141227 | 9294002 ~ 9295885 (+) |
| G142979 | NA | non-coding | upstream | 15616 | 9134816 ~ 9135305 (+) |
| G142978 | NA | non-coding | upstream | 16801 | 9133861 ~ 9134120 (+) |
| G142940 | NA | non-coding | upstream | 27664 | 9109252 ~ 9123257 (+) |
| G142920 | NA | non-coding | upstream | 29364 | 9105234 ~ 9121557 (+) |
| G142974 | NA | non-coding | upstream | 34641 | 9112456 ~ 9116280 (+) |
| G142929 | NA | non-coding | downstream | 25461 | 9178236 ~ 9178527 (+) |
| G142907 | NA | non-coding | downstream | 55812 | 9208587 ~ 9266823 (+) |
| G142941 | NA | non-coding | downstream | 129649 | 9282424 ~ 9283057 (+) |
| G143037 | NA | non-coding | downstream | 136863 | 9289638 ~ 9289879 (+) |
| G143038 | NA | non-coding | downstream | 137638 | 9290413 ~ 9290643 (+) |
| CI01000027_08255251_08264629 | NA | other | upstream | 890095 | 8255073 ~ 8264897 (+) |
| CI01000027_08026500_08029412 | ENSAB, ENSA | other | upstream | 1118880 | 8025788 ~ 8032041 (+) |
| CI01000027_07947743_07951397 | NA | other | upstream | 1198979 | 7947657 ~ 7951942 (+) |
| CI01000027_07469157_07471720 | NA | other | upstream | 1679207 | 7468964 ~ 7471999 (+) |
| CI01000027_06951132_06956691 | GLIPR2, GLIPR2L | other | upstream | 2193154 | 6951132 ~ 6957767 (+) |
| G143033 | NA | other | downstream | 576040 | 9728815 ~ 9729551 (+) |
