CI01000028_03243337_03247393 (SPRED3)


Basic Information

Item Value
gene id CI01000028_03243337_03247393
gene name SPRED3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 3240956 ~ 3248380 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_03243337_03247393.mRNA
CTATATAAAACGCCTTCAATGCCGCGTGAAAGACGAATAGGGTGCAGTAAGAGACGGCTTTTTGTCTCGAGGATGATGTGTGTGGAGGCTCCACGTATAACCACCAAATACATCCATGAATTATAAAACGTGTCGTTAAAAAATCGACGAAATATGGCGAGTTTTCTGGCGTCGGGAACACATTGGCGGGATGGAGGCGCAGAGGGATGCTTTTATCAACGCGTCTCGAGTTTCATTATGATTTTTAAAGCCAAACTTTATGAATGAAATGTGATTTTTCTCTCACCCCCCTCCTCCTCTTCATGTCTCCCCCTCCCCCCAGCGCTTCTCTTCTTCTTCTTCTTCTTGTCCATATCCTCCTTTCACCCACTCATCTGCCCATTGAATTTGCTGTGCTGTAGCATATATGTAGTTTTATTCATTCATAAAACAGCGGGATGAACGAATGAGTGCGCGTGAACGCGTGTTGATCGGACGATATGGTGGTGCAATGGCTTATAATAACTGACAGCGTTTAAAATAATACAAATGGGGCTCTGAATCAAAATGGATGTGATTTCATAGCGTTTATTGTAATGGAGCTTGTCGGACTGAAAACCCGCTATGAGGGCCTTTATGGCGAATGGGCGCGTTCATTGATACATCTCAGGGAGGAATATAACTCTTCATCTCCCACCCTCTCCCTCATCATCTCCACACATTTCATTCCCCTCAGGCCATTCATTAATTTACGATTTCTTTCTTTGTGCTACTCCCTCATATTAACATATGGAGCTATTATGTTCCTTGTTGTTTTATATTGGTTTCGTTGTAAATGTAGAATGGCTATATTAAGGACTTTTCTACAGAAATGAGCGATGGCTGTAAACGCTTGTTCCGTGTGCACGCTGAAAGTGTGATTAGATTTTCCTCGCCCACGTGACCGTCCATTAAAAAAATCGCGCTGTTTCCTCTCATCGTTATAATCGTGCCTCACTGTATATATATATATATATATATATATATATATATATATATATTAGAGACTGAATCTATAGTTTATGGAATACACAAAGCACACATGATGTTATGATTTAAGATTATTCATTCCATTTAACACAATAAACCAGTCATCGCCACCACACCACACCATTTTGTCTCAAGAAATCAATCAAAATTCACCTGTATCCCCGTGTCTAGTCAGTACTTACAGCAGCCTACATAACATTAAAGGACGTTTTTTTAATACCACGCATAAAATGACATTTTACCTGATAGATATCACTGAAATGGGTGTCTTGACAAATCACACCTGTCTCTGTCACCGCAAAACTAGTCGGGGGGAGCGGCCCGCCCTTTTTTAGCCAATCAGAAACGATCTCGGCCTGTCAATCCTTAGCAAGTTCGGATTTGATGACATATCTTTGGGGCGGGAGAAGGGGCGTGTCTAATTAGTGGCTAAATCTGGCGGATGTTGTCAAAAGGGGTAAAATCAATTACAGCACCCTAAAAATTGACCCTATTTACTGCACGTTTAATGTATGTTATGGCTCTTATTTTGGAGCACTCATAAGTACAAATTAATTCAAATGTCTTTGTAATGTTTTATAACTTGCTCCACCTCTGAAATGACTTTTCATTTGGACTAACATCATCATGGCGTGGGCAGGGAAAAGAGCCAAACATGTTTCATCCACTCCCCTCCAGTCATGTGTCTGCTGCTAGCTGTGACCATCACACGAACCATATTGTAGTCGAACGATTGCAAGGTGCATTTCCCTCCCAAAACCCTGTTTTTTTTAGCCCCAAACCAACCTGGCTGCAATTGGCTGTCTTGAATTTTTCCATTTCAAGGCATTTCACTAGTCGATTCATTAGTGCATGTTGTTTCTAATAATAAAATGTTTGTCTTTGTAATCTTTTCTTCAAAATGTAACAACTTGCTCATTGTCTGAAACAGCCTTTCTATGATGATGTCCAACCACTTTAACGTCTATACTTTTCATGATCCAATAATCTTCAAATGGATAAAATCCCCACCTTGCCTTTTTTTCCTCGCTGAATATTCTGTTTCACTTGGAAATATGTCCAGAAAGATTACAGACGCAAAATGGGTTATGAGCGTCATAATTTTAGTGGATATTTCTGGCCAATAATGTTACTTCCTTTACACATCTTCACACTGTGTCTCTGTAACCCAGTGTCTTTTCTCTATTATTTGTCATTTACCTTTATTTTGAGGGTGTTTTGATATTTTATACTGATGGTTGTATTTTCTTCTTTAATGGCCTTTGTCTCAAAGTCTGTGTTTGTGCGTGTGGGTGTGTGGGTGTTTGTGCTCAGCTGGCTAGTGCACTCACTCCTTTTACTTCCCTAACAGTGTGCGTGTCCGAGCGGTGGTGATGACACGTGACGATTCTAGTGGTGGCTGGGTGCCCCTTGGAGGTGGCGGCCTCAGTCACGTGATCATTTGTAAGGGGCGGAGCTCTGAAGGTCGTGGGCGGAGAGAGTACGTCATACGCGGAGAACGGCTACGCGATCGAGCACCTGTGCTGGAATGTGCCATTCAAAAGGGTCTGGTCTACAACAAGGTGAACCCCATCTTCCATCACTGGCGTGTGGAGGAGAGGAAGTTTGGTCTGACCTTCCAGAGTCCAGCTGACGCCATCTCCTTCGAGAGGGGGCTTCAAAGTGTCCTTGATAAGCTGGACAGAGGATCAGACTCGCCATCCTCCTCGACTCCTGAAGAGGGCGACACTGAGGATGATGGTCAAGCAGTGAGTGTTTTTATCACATCAAAGTGCTTCAGAGTATCTGGTTCATCTTTGCGTCTATGGAGTGAGTCGTCGTCCAACAGCAGAAAAGAGATGCTGCCCAAACCCATTACCATTGTGACCAGTGAGTCCTCCTCCACCTGTTTTGTGCGCTCCACAGAGGAGTTTGCGTATGGGACAAGTCACGCTGTCACGACACAGACCCCGGCCCAGGAAGGGGACCTCCGCAGCCTGGACCCCTGCAAGGACCTGTGGGGTACGCGCGGCTATGAGGACTACCGGCGCGCCGGTGCTACACGGACCAAGGTGGGCGGGCTGACGGGGGGCGTGGTGGTGAGCGGCAGCCAGGACAAGTCAGAGCTTTGCGTGGTGCGCTTCGAGAAAGAACTGGCCGGCGTGGGCACCACAGGCTGTGAGGTCACCGTCATGCTGGACACCAAAGGCTCTCAGTGCAACTCTTCGCCCACCTGCATGCCCAACGCCGTGCCGGGGGTGCCGTCGGCCAGCGGCTCCCCGCAGGAGACGGGCAAAGGCTCGCCCTCTCCCTGCTGCATCCACACCTCGCTCGCCACGCCCCGCTCTCGGACTCGCAAGCGAGGGGGCGGCGGAGGGGAAGCCATCTCCCCTGACGACGACAGCTCCTGCCCACAGGGCTCCTCCTCCTGCTCGTCGCGCTGCGTGTACTGCCGCTCCGTCTTCAGCGCCTCCGAGAACGGACGGGGCCGCTGCCGGGACGCTCCGGACCCGGCGCTACACTGCCTGCGCCAGTGGACGTGCGTGTGGTGTGCGGAGAGCCTGCTCTACCACTGCATGTCGGACTCCGAGGGCGAGTTCTGGGAGCCGTGCTCGTGCGAGGACTCGATGGGTGGCCGGCCGCACCCGCTGTGCTGCGCCCGCTGGATGGCGCTGCTGGCGCTGTCTCTTTTCGTGCCCTGCATGTGCTGCTACCTGCCCCTGCACGCATGCCTGCGCTGTGGGGAGAGATGCGGTTGCTGCGGAGGAAAGCACAAGGCCGTGCGATGAGGCCTGACCGGGGGGAGGGCGCGTGGGCGGGGCTTATTGTGACGGGGACGGGAGCACAAAGATGACGAACGGTCGTAGAGCCAGATCTCCTACATAAACCTTCACGATAATATCCCCTCGCCCCCACCAAGGCCGTCTGCTGCATTCCGCTCTTTCTATTCTCTGCTCGGACCCTTCACGCTCGTACCGGCGGTGGGTGCATGGGTTCGGGGAGATCGCTCTCTGATTTGCTGGTCGTTGGGGTCAGGGGTCGTCTCCGGGAGGTGGGGAGTGAATGGGGATCAGTGACGTGTAAACAATTGTTAGTTTTCTTTTCTCTTGGGTTCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTAGGGAGAAAATATGAGATGAAAAAATGTTTATAGCTAATGTTCTCAGACCTTTTTTTTTTTGAGTATCTTATTTTACTTGAACAACTGAAAGATATTTTTTTGCAATTGATTTAACAAATACACTCCCCTTGTACCTCTAAGTTACTGAGTTTTACCTCAATGTCCAGAGGAGAGTAAGGCAGATAGAGAAAGAGACTTATTTTGGGGACTGTGTGCTGTGGTGAGGTTTTGTATATGGTCTTTGCGGTAGGTTTTTCACACACGTTCGGCCAGAACTTATTTGTGAAGGAGAACATTTTGATGTTGTACCACATTTAGTTGTTCGAGAACAGGGAACGTGAACGGTCTGATCGAGGGCAGTTTCACCAAAACCACCACTTTCACCACATAAGGACACATACATGCTCATTCTTCTGTTAAGAGTATAGTTGTGTTTAACTTGCCAACAACTGAGAATGTTGCCTATATTTAAAGGATAGACCAAAAAAAGTGGAGAGATAATCTAGACCTGAATCTGCCGAACATTTGCACAGCAAATGTAAACCGAGGCCTTGAAACGTAGTTGTACATGCCACCAAAAATACAGTGCAAATGAGTTATTAGTCAGAAGGAGAGA

Function

symbol description
spred3 Predicted to enable protein kinase binding activity. Predicted to be involved in negative regulation of peptidyl-threonine phosphorylation; positive regulation of DNA damage response, signal transduction by p53 class mediator; and regulation of protein deacetylation. Predicted to act upstream of or within regulation of signal transduction. Predicted to be located in membrane. Orthologous to human SPRED3 (sprouty related EVH1 domain containing 3).

GO:

id name namespace
GO:0009966 regulation of signal transduction biological_process

KEGG:

id description
K04703 SPRED; sprouty-related, EVH1 domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_03243337_03247393.mRNA True 4763 mRNA 0.47 5 3240956 3248380

Neighbor

gene id symbol gene type direction distance location
CI01000028_03232374_03235527 PSD8, PSMD8 coding upstream 5370 3232178 ~ 3235586 (+)
CI01000028_03155827_03157194 NA coding upstream 83762 3154001 ~ 3157194 (+)
CI01000028_03097428_03106553 SRPR, SRPRA coding upstream 133428 3097428 ~ 3107528 (+)
CI01000028_03074166_03080440 NA coding upstream 160054 3074039 ~ 3080902 (+)
CI01000028_03053581_03067840 PEX16 coding upstream 172448 3053454 ~ 3068508 (+)
CI01000028_03334040_03380006 APLP2 coding downstream 85660 3334040 ~ 3380553 (+)
CI01000028_03385787_03404112 PRDM10 coding downstream 137162 3385542 ~ 3404216 (+)
CI01000028_03407831_03417774 NA coding downstream 159451 3407831 ~ 3418566 (+)
CI01000028_03426799_03428872 NA coding downstream 176485 3424865 ~ 3430150 (+)
CI01000028_03522456_03524618 NA coding downstream 273589 3521969 ~ 3525207 (+)
G145799 NA non-coding upstream 24530 3214609 ~ 3216426 (+)
G145801 NA non-coding upstream 28539 3209266 ~ 3212417 (+)
G145873 NA non-coding upstream 52803 3187781 ~ 3188153 (+)
G145870 NA non-coding upstream 79308 3161421 ~ 3161648 (+)
G145826 NA non-coding upstream 114599 3126071 ~ 3126357 (+)
G145895 NA non-coding downstream 156793 3405173 ~ 3406205 (+)
G146615 NA non-coding downstream 174945 3423325 ~ 3423603 (+)
G146617 NA non-coding downstream 175893 3424273 ~ 3424485 (+)
G146627 NA non-coding downstream 187442 3435822 ~ 3436115 (+)
G146635 NA non-coding downstream 218215 3466595 ~ 3482489 (+)
G145843 NA other upstream 216736 3023146 ~ 3024220 (+)
CI01000028_00525538_00533862 NA other upstream 2719025 524647 ~ 535245 (+)
G147462 NA other downstream 1710323 4958703 ~ 4989838 (+)
G147636 NA other downstream 1967710 5216090 ~ 5216611 (+)
G147693 NA other downstream 2192074 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 4221512 7469543 ~ 7471432 (+)
CI01000028_08302370_08504940 SPON1, SPON1A other downstream 5053867 8302247 ~ 8504940 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location