Gene
RNA
| Item | Value |
|---|---|
| gene id | G145297 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000028 |
| NCBI id | null |
| chromosome length | 9874160 |
| location | 1259203 ~ 1259465 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU165092 | True | 263 | lncRNA | 0.38 | 1 | 1259203 | 1259465 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000028_01011845_01028684 | NA | coding | downstream | 229598 | 1011608 ~ 1029605 (-) |
| CI01000028_00801939_00810126 | SMTLA | coding | downstream | 449077 | 801323 ~ 810126 (-) |
| CI01000028_00767836_00797742 | NA | coding | downstream | 459818 | 767679 ~ 799385 (-) |
| CI01000028_00704858_00705817 | NA | coding | downstream | 552436 | 704770 ~ 706767 (-) |
| CI01000028_00616942_00640490 | FLI1, FLI1A | coding | downstream | 617027 | 616390 ~ 642176 (-) |
| CI01000028_01381059_01398155 | BARX2 | coding | upstream | 119707 | 1379172 ~ 1398357 (-) |
| CI01000028_01403859_01408636 | NA | coding | upstream | 144241 | 1403706 ~ 1408680 (-) |
| CI01000028_01582515_01591864 | NA | coding | upstream | 322564 | 1582029 ~ 1592168 (-) |
| CI01000028_01707320_01709779 | NA | coding | upstream | 447293 | 1706758 ~ 1710606 (-) |
| CI01000028_01770721_01773265 | NA | coding | upstream | 511176 | 1769608 ~ 1773344 (-) |
| G145296 | NA | non-coding | downstream | 361 | 1258618 ~ 1258842 (-) |
| G145293 | NA | non-coding | downstream | 3210 | 1247284 ~ 1255993 (-) |
| G145282 | NA | non-coding | downstream | 20425 | 1226479 ~ 1238778 (-) |
| G145315 | NA | non-coding | upstream | 36165 | 1295630 ~ 1295935 (-) |
| G145908 | NA | non-coding | upstream | 76884 | 1336349 ~ 1336697 (-) |
| G145911 | NA | non-coding | upstream | 83874 | 1343339 ~ 1343651 (-) |
| G145914 | NA | non-coding | upstream | 110639 | 1370104 ~ 1370321 (-) |
| G145917 | NA | non-coding | upstream | 115153 | 1374618 ~ 1374848 (-) |
| CI01000028_00474810_00475211 | NA | other | downstream | 783857 | 473609 ~ 475211 (-) |
| G144855 | NA | other | downstream | 1123327 | 135392 ~ 137202 (-) |
| G146190 | NA | other | upstream | 838105 | 2097570 ~ 2111265 (-) |
| G146238 | NA | other | upstream | 887913 | 2147378 ~ 2160038 (-) |
| CI01000028_02441408_02445596 | RPL35A, GM10247 | other | upstream | 1181867 | 2441332 ~ 2445596 (-) |
| G149329 | NA | other | upstream | 5440048 | 6699513 ~ 6701240 (-) |
| CI01000028_06969947_06983352 | NA | other | upstream | 5711292 | 6965064 ~ 6984084 (-) |
