CI01000030_07788973_07791700 (TUSC2B, TUSC2)


Basic Information

Item Value
gene id CI01000030_07788973_07791700
gene name TUSC2B, TUSC2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7788797 ~ 7792198 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_07788973_07791700.mRNA
ACAAACGTTGTAAGACATTATGATGATGTTAGCTGTATTAGCATGAAAGCTACATCAATTTAGACAATTGGAAAATAAAATAATTAAACTGAATGTTATTAAATAATAACAATACTTATGTAAAATCTTTTTAGTAATAAAATATAATAAAATGGACTCTTGTCACACAATCTGTATTGTTTTAAGATGCTACATGCTATTGCTGAAGTTAAAATCTCTGTTACATAAATTATTGTTCAAAATGTCAATTTTTAAAGAACGTAAAACAGAATTTATGATGGATTTGGTGTTTGACTTGGTGGGAAAGCACAGATCACAAATTTCCCATGTCATAAAAAGTAGCCATATTTTATTATGACTGACATTATCAGATTCATGATACCAATATGTAAATATTTAACAGTATGAGTCAAATAACCGGTTGTTCTTTTGTCCTTCAAAGCTGTACGTCTGTCCCAAGTGTGACCCGACCAGGAGGAGAATGTTCTGCGGCCCATGATGGGCGGCAGCGGGTCTAAAGGTAAAGGGTACTGGCCGTTCTCTGGTTCGGGTAGCGGGGATGAACCTGCCAAAGACGGCCAAGAGCAGAGCCTGGCCAGGGTACGGAGCATTCGAAATGCGACGCCTTTCGTGTTTACCAGGAGGAGCTCTTTGTACTTCGATGAGGACGGTGACCTGGCCCATGAGTTTTATGAAGAAACGGTAGTAACGAAAAACGGCCGTAAGAAAGCCAAACTAAAACGAATCCACAAGAATCTCATACCTCAGCACATCATGAAGGACTTTGGAGGACCTTCTAGAACGTTCTGTTTAGAATTCCGAAGAAGTTCTAGAAGCCCTCAGAAAGATCAGGTTGCATTTGAATGCTTTAATCAGCGGACATTGTATAACAAGCAGAGCTTCGCAGATCGTCAGGATGCGATGTTCGTAGAGCCAGTAGGAGATAATCAATGGCTGTTTACTACGCTGTGATTTGTTTGTATGCTGATTGGATGATGGAATTGCTGCCGCTCCTTGATTGGACAGTTGAGGCACTGACTGACACAGTTATGACAGTCACTGTGAGAAGCCCCGCCCCCCCCTCACTGTTGTGGCAGTCTTTATTTATTACAGTTGAAATGACCAGTTGGCATTAAA

Function

symbol description
tusc2b Predicted to be involved in inflammatory response and regulation of mitochondrial membrane potential. Predicted to be active in mitochondrion. Orthologous to human TUSC2 (tumor suppressor 2, mitochondrial calcium regulator).
tusc2 Predicted to be involved in inflammatory response and regulation of mitochondrial membrane potential. Predicted to act upstream of or within several processes, including natural killer cell differentiation; neutrophil-mediated killing of gram-negative bacterium; and regulation of cytokine production. Predicted to be active in mitochondrion.

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_07788973_07791700.mRNA False 1137 mRNA 0.40 4 7788808 7792198

Neighbor

gene id symbol gene type direction distance location
CI01000030_07769918_07776928 HYAL2B coding downstream 11880 7768948 ~ 7776928 (-)
CI01000030_07761302_07764226 ABHEA, ABHD14A coding downstream 24582 7761302 ~ 7764226 (-)
CI01000030_07749038_07754607 NEWGENE_1305281, HIAT1B, MFSD14A, MFSD14A.L coding downstream 34201 7748786 ~ 7754607 (-)
CI01000030_07736031_07737720 LSM7.L, GM13182, LSM7 coding downstream 51088 7735436 ~ 7737720 (-)
CI01000030_07726597_07733277 TMPRSS9 coding downstream 54219 7726389 ~ 7734589 (-)
CI01000030_07794056_07801708 RASSF1 coding upstream 1473 7793671 ~ 7801708 (-)
CI01000030_07802211_07804196 NA coding upstream 9851 7802049 ~ 7804223 (-)
CI01000030_07810359_07822361 RAD54L2 coding upstream 18161 7810359 ~ 7822361 (-)
CI01000030_07889005_07897250 ATRIP coding upstream 96133 7888331 ~ 7897250 (-)
CI01000030_07901178_07901441 NA coding upstream 108392 7900590 ~ 7901441 (-)
G163439 NA non-coding downstream 7256 7781244 ~ 7781552 (-)
G163435 NA non-coding downstream 61405 7727193 ~ 7727403 (-)
G163433 NA non-coding downstream 85099 7703408 ~ 7703709 (-)
G163416 NA non-coding downstream 133194 7655039 ~ 7655614 (-)
G163415 NA non-coding downstream 135830 7652602 ~ 7652978 (-)
G163445 NA non-coding upstream 37493 7829691 ~ 7830607 (-)
G163448 NA non-coding upstream 51614 7843812 ~ 7844268 (-)
G163449 NA non-coding upstream 52822 7845020 ~ 7845475 (-)
G163451 NA non-coding upstream 57063 7849261 ~ 7849617 (-)
G163139 NA other downstream 638664 7149474 ~ 7150144 (-)
G163065 NA other downstream 863151 6924483 ~ 6925657 (-)
CI01000030_06747047_06752255 NA other downstream 1036397 6746960 ~ 6752411 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other downstream 1084063 6701055 ~ 6704745 (-)
CI01000030_08185866_08194632 NA other upstream 399721 8184897 ~ 8197266 (-)
G163873 NA other upstream 1141215 8933413 ~ 8933982 (-)
CI01000030_09277337_09294501 NA other upstream 1495008 9276431 ~ 9294802 (-)
G164071 NA other upstream 1682990 9475188 ~ 9476264 (-)
CI01000030_10103451_10131419 NA other upstream 2323317 10102944 ~ 10133765 (-)

Expression


Co-expression Network