G163398


Basic Information

Item Value
gene id G163398
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8165097 ~ 8167093 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU185646
TTGGTTTTGTTTATTAGTCACAATCACTGTACATTGTGCTTTAATACATTTCCACGAGAATGTCAAGTTAAACATGTGTATATAATACAAATTATGTACAAATAACATATTTACAAACATTTTTAAATAAAAGTGTGAGCGTTTTTATTTTTGTAAATAGACAATTTCCATAATGTGCCCTTATGTTGCACAATTTCTGGTATCATGATCTATATAGTCCTTAAGTTTGTAACATCCACACCCTCCAGGGACAAACATTTGGATTGACGACTACGGTCTTCTGCGTCAGTCTGAGACGCTTGTGGACTGCAGCTCTGCTCATATTCCTGCAAGATCTTCACCACATCCTTGTGGCCGAACTGCATGGCGTCGTCCCGAGGAATATTTCCCCACCTGAATTACAGATATGAGGTTAATTATGACCAAATGGATGGAGCTGAAGGTAAATGTATAAACAAAGATCTGTACCGATCTTTCACAAAAGGGTTGACTTTGCAGGCCTGCGTCAGAAATAGCACGACATCCGCGTGACCTAAAACAGAACAGACACAAGCCAAATTGAATTTATAATTAAATAAACCATATTTGGCACTAAAAGATGCTTAAATGTTTACAGAAAATGATTCTACCTTCTGCAGCAGCTACGTGGAGAGGTGTACGAGAGTCATAGTCCTTTAACTCCATATTCATGGATGAAAGGGAAAACCTGATGGAGGAAAAGAGAGACTAGTAATATACATTTCAGTAGCACTCAAATTTTGAGGCAAAGCGAAGACATTGTGAACTGTATAAAATGACCTCCTCAGAGCTGAGACATCTCCACTGTGAGCTGCGAACATCAGATTCACCACCGACTTGTTCTACAACAGATTTGGTGCGTTCATTACTGGATCTAATAACCTGACTAAAAAATAGCTTAATGTTGGACATTCTCACAATCTTTTGGTGTTTAATGTTGTAGTTTAGTTCATTTGGTTGGTATGTTCAAATGTAAGGTTTACCCTGTCGTCACCAGACTGTCTGCGAGGGTCCTGCTTCTTCAAAAAGTGCCTCAGATTGTCGTAGTTGTGGAAGTTGAACAAAGACACCAATTCCTAATTACAGACGAGTTACAAAATTAGTTATTTATACAAAATGTATGGTCTGGAATTAAAAAGAGGGTGATAAACCAACAGGACGATGACAGAAACACCTGACAGAAGTGGATTCCACGGACGCTGTTTCCGATTTTGTCCACAGGGGGCGACCAACACATGATGCCCATCACGTTCGGCACCACCAGAAGAACTGCACCTGACACACCAGACTTGGCAGGTAATCCGACCTGACACATAATAAAAACTTTAGATATACAAAAGATATAGATATACACTTATATTACTTATTAAAGGGAGAAAGTGCAACTGGCAATATAGTGGAATAAGTCCCGCCTTACAAATAAAAGAGCCTTTTTTGAGATTTCAGGATTTCCCCATTCAAGTACGTAGGACTTGGTCATGGACGCCCAAAATATCTGGCCAAGGCATAAATATGGCAGCCGAGTGAACAGACTTTCTATGAATGGGACTTTGCATGTACTGAGATGTAAAGATCCTCAGAGTTCTTTGCCATGAGGTGCCATGTTGAACTTCCAGTGACCAGTATGAGAGAGTGAGAGCAATAACACCAAATTTAACACACCTGCTCCCCATTCACACCTGAGACCCTGTAACACTAACAAGTCACATGACACCTGGGAGAGAAAATGGCTAATTGGGCCCAATTTGGACATTTTCACTTAGGGGTGTACTCACTTTTGTGGCCAGCGGTTTAGACATTAATGGCTGTGTGTTGAGTTATTTTGAGGGGACAGCAAATTTACACTGTTATACGAGCTGTACACTCACTACTTTACATTGTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU185646 True 1901 lncRNA 0.40 2 8165097 8167093

Neighbor

gene id symbol gene type direction distance location
CI01000030_08144020_08149228 TBC1D20 coding downstream 15869 8143888 ~ 8149228 (-)
CI01000030_08128628_08130625 RPP14 coding downstream 34472 8128462 ~ 8130625 (-)
CI01000030_08123594_08127280 PXK coding downstream 37610 8123192 ~ 8127487 (-)
CI01000030_08101126_08107526 PDHB.S, PDHB, PDHB.L coding downstream 57415 8100868 ~ 8107682 (-)
CI01000030_08096309_08096995 KCTD6B, KCTD6, KCTD6A coding downstream 68102 8094843 ~ 8096995 (-)
CI01000030_08175807_08180515 NA coding upstream 7829 8174922 ~ 8180893 (-)
CI01000030_08185866_08194632 NA coding upstream 17804 8184897 ~ 8197266 (-)
CI01000030_08201019_08203601 NA coding upstream 33073 8200166 ~ 8203645 (-)
CI01000030_08232550_08241049 NA coding upstream 65008 8232101 ~ 8241049 (-)
CI01000030_08328834_08331465 NA coding upstream 161009 8328102 ~ 8331540 (-)
G163493 NA non-coding downstream 8491 8156371 ~ 8156606 (-)
G163479 NA non-coding downstream 151807 8013054 ~ 8013290 (-)
G163478 NA non-coding downstream 153103 8011148 ~ 8011994 (-)
G163385 NA non-coding downstream 282004 7881819 ~ 7883093 (-)
G163463 NA non-coding downstream 303409 7859913 ~ 7861688 (-)
G163495 NA non-coding upstream 1425 8168518 ~ 8168826 (-)
G163496 NA non-coding upstream 2263 8169356 ~ 8169580 (-)
G163500 NA non-coding upstream 42648 8209741 ~ 8209978 (-)
G163507 NA non-coding upstream 79345 8246438 ~ 8246812 (-)
G163511 NA non-coding upstream 91960 8259053 ~ 8259386 (-)
CI01000030_07788973_07791700 TUSC2B, TUSC2 other downstream 372715 7788797 ~ 7792198 (-)
CI01000030_07736031_07737720 LSM7.L, GM13182, LSM7 other downstream 427093 7735436 ~ 7737720 (-)
G163139 NA other downstream 1014953 7149474 ~ 7150144 (-)
G163065 NA other downstream 1239440 6924483 ~ 6925657 (-)
CI01000030_06747047_06752255 NA other downstream 1412686 6746960 ~ 6752411 (-)
G163873 NA other upstream 766320 8933413 ~ 8933982 (-)
CI01000030_09277337_09294501 NA other upstream 1120113 9276431 ~ 9294802 (-)
G164071 NA other upstream 1308095 9475188 ~ 9476264 (-)
CI01000030_10103451_10131419 NA other upstream 1948422 10102944 ~ 10133765 (-)

Expression


Co-expression Network