CI01000032_00503123_00508468 (PNOCA)


Basic Information

Item Value
gene id CI01000032_00503123_00508468
gene name PNOCA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 503123 ~ 508487 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000032_00503123_00508468.mRNA
AGTGCACTTCAGCTGTTAACACACTCCGTGATGAAGACTCCACTGTGGACGCTACTGTTGCTTGGACTGTGTAACCCAGCATGGTGTGACTGCCAGAAGGATTGCCTCTTCTGCAGCCAAAAACTGCCTAATGAATATGCCTTCAACAATTTGGTTTGTCTGGTAGAGTGTCATGGTAAACTTTCACCAGGCAACTCCTGGGAGATGTGTCGCAGGACCATTGTGGAGCAGAAACCAAAAGCCTCATTATCAGTTGGAGGTGCCATGCTGAAAAGAGCAGATGAGGAGGCAGACACCTCTCTGCCTATGGACCAGGATGATGGGCAGTTTTCTGATACCCTCCAGAGGTTTGACCACATAACACGGGCTTTGGAAATGGATGATCAGGACCGAGATATGCAACTCAGTAAAAAATACAAGTTCCTGCAAGTACAGTCGGCACAGGAATCTGAGGAAGAGCGAGATGGAGACAGCGAGATGGAAGGCAATGAGGAAGAAGCTGCCATCCACCTAATCAAACGCTTTGGAGGGTTCCTCAAAAACAAGTATGGCTACAGGAAGTTCATGGATCCTGGCAGGCCTTTGCAAAAGAGATATGGGGGTTTCATAGGCGTCCGCAAATCCGCTCGCAAATGGAACAACCAGAAGCGTTTTAGCGAGTTCCTCAAGCAGTATTTGGGCATGAGTACTCGAGCTAGCGAGTTCAATAGTATGTCTGCTGATGTCACCCAACCGAATGAGTAAGCTTTGACCTTTGAAGCGA

Function

symbol description
pnoca Predicted to enable opioid receptor binding activity. Predicted to be involved in chemical synaptic transmission; neuropeptide signaling pathway; and sensory perception. Predicted to be located in extracellular region. Predicted to be active in several cellular components, including axon terminus; dendrite; and neuronal cell body. Is expressed in dorsal habenular nucleus; pancreatic A cell; and posterior pancreatic bud. Orthologous to human PNOC (prepronociceptin).

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000032_00503123_00508468.mRNA True 763 mRNA 0.48 2 503123 508487

Neighbor

gene id symbol gene type direction distance location
CI01000032_00388582_00397426 HMBOX1A, HMBOX1B, HMBOX1 coding upstream 105636 388367 ~ 397487 (+)
CI01000032_00367671_00375509 KCNK13, KCNK13A coding upstream 127323 366723 ~ 375800 (+)
CI01000032_00327020_00343184 NA coding upstream 159895 326645 ~ 343228 (+)
CI01000032_00284138_00297125 NA coding upstream 205790 284019 ~ 297333 (+)
CI01000032_00244515_00250420 NA coding upstream 252057 244411 ~ 251066 (+)
CI01000032_00541441_00550673 MAP7A coding downstream 32954 541441 ~ 550749 (+)
CI01000032_00716503_00725057 NA coding downstream 208016 716503 ~ 725436 (+)
CI01000032_00731152_00733159 GJA10, CX52.7 coding downstream 222331 730818 ~ 733454 (+)
CI01000032_00767450_00771237 MANEA coding downstream 258589 767076 ~ 771395 (+)
CI01000032_00778485_00779572 FUT9A, FUT9 coding downstream 269998 778485 ~ 780766 (+)
G165110 NA non-coding upstream 39500 463413 ~ 463623 (+)
G165034 NA non-coding upstream 235517 265712 ~ 267606 (+)
G164956 NA non-coding upstream 361349 140159 ~ 141774 (+)
G164929 NA non-coding upstream 377691 92573 ~ 125432 (+)
G165230 NA non-coding downstream 1696 510183 ~ 517226 (+)
G165253 NA non-coding downstream 52707 561194 ~ 599400 (+)
G165263 NA non-coding downstream 69678 578165 ~ 578424 (+)
G165284 NA non-coding downstream 92435 600922 ~ 601686 (+)
G165236 NA non-coding downstream 95877 604364 ~ 606120 (+)
G165570 NA other downstream 841091 1349578 ~ 1357567 (+)
CI01000032_01698448_01701006 NA other downstream 1190001 1698448 ~ 1701288 (+)
CI01000032_02773889_02774396 NA other downstream 2250245 2773889 ~ 2774501 (+)
G166734 NA other downstream 2326827 2835314 ~ 2849684 (+)
G166765 NA other downstream 2448301 2956788 ~ 2957213 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012007 pnoca coding NC_007128.7 CM002901.2 16110285 ~ 16133249 (-)