G165570


Basic Information

Item Value
gene id G165570
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 1349578 ~ 1357567 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU188086
CCATGTTCTAAGACAAGCCAGTATTAACGTCTGGAGCTGCACAGCCAAATCATCAGAAGTTATGCAGTGTTTAATGGAGTCACGAGCTTGGGAGCGGGGAGCACGAGCATTTAAAGGTTTACACGCACTGAATCGGCGATTTTTAATCACACCCCAAAACAGGCAGTTAAAGGTGCAATATGTCTATTTTCTGTCCGCTAGAGGCCTATTCAAAACAAAGGCGTAGCTTGATGACAACAAGTTTGAGCACGGAATCTTGGGACATGTGGTCTTCACCTCAATGGCCGGTGGAAAAGAATTGGGATAGGACTCGGGAAGAAATCATGTTCATGGATGCGATTATTAACGTCACTGTAGTATGAAGCAGAGCAGGACTGTGTGTTGTGGGAGCTGAACGAGGCTGCTGGAGCGATTGTGCAACACATGCCGTGAGCAGCGGAACTTTTATTATGCCACAGTCGCCGGCGCCGCTTCCGCTTTTCTGGTCATGAGGTGGTCCTCAAACTTCAGTCAAGGGCGAGAGGCACGTAAAGCCAGAGGGAAGACATGGACAGATGTATGCGAATTTAGGTAATGGTGTTGTGTTTCGGGGTTTGCTTGGCTTGGCCATCCCTAGTAAAGATAGTGTTAATTAATTTGTTTGCTTTGCCTTAAGCTCTAACGAATGGTGCTCTCCAGGCCTTGAGGAGCCATCATTGGGTGAGGAATGCCGCCTAAAACCAACATTTGTTATACAAATTAGTTTCATATGCTCCAGGTATAGGGCTGGGGGGGAGGGAATTCACCCCCTGCATATTTCTGCCCCTCGACCACTGTTACCACTCGCACTCCTTTATCCACTTGAGCCTTTTTATATGCTATGGCTGCTTAACAATTTGGGTTTGTAGGTTAATTTTTCTGTGCCTAACTTGTGGTTTGCCCCATTTCCTTCTATGTCAAGACAAATTTAAGCGAAGAAACTTACATTGAACCAGACACTGAAGCTGATTGGAAGATTTAAGTGATCACCAGTCTCTCAAATTGATGGCCTCATTACCACAATGTATTTCAATCAGGTTGATAAATTATGAGGTCTGCATTTTCCATGGCGTATCAACATCTTACATCACGGAATGTTCAATATTCATGGAATGACTGGTAAAACAGATAAATTCAGAGTTGTGAAAAACAACAGACTGGATCGGCTTCAAAGTTTTCCTCCAGTGTTCCTGGAAGCGCCAACGTGTCCTTTAAAATATTCCGGCCAGTGTGTGACTGTGTTACTCCGGAGCTGCTTATTTTTGATGCGACTGTCTCTATGCATGATCATGTGCAAGCGACTCATTCCAAGCAAGAGTGTTTTTCTTGCTCAAACACAGAGCAGAAATGTGCCGTCAAACAGATGTTAGGAGCCCTTTGTAGAGTCCTGGCACACATCCAGACTCTACCTATCTTCACAACTATTTACATGGTAATCCAGCTGGTCACTCCCTCTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTGTATGTCTTATTCAGGCTCTTGGATCAATTTGAATATATTTCTGTTTTAAATCGGTCAAATATTACATCAAACCCTATCAATCTATCAGCATGTTATTCAATAATTAGTACTAGGTGAAGACAGAATCTGTTGATTGGATTTAATGGAATAGTTCACTACAAAATGTCATTATTTATGACATGGTTTAAAACTTATATGCTTTTTTTTTCTTTTTTTCTGTGGAACACAAAAGCAGCATTTTTCAAGAATTTTCACACTTTGTGAGACATACAGACCGAAATGTATAAATGTAAGGGTTGGTTCACGCAAAAGGGGGGGGGGGGGGGTATTCACATACAAACATTGGCCAATGCACATACATAGAGCACATTAAAAATGGTAAAAGGAAGATCAAGCATGTATGTGTATGATGCGCAAAATCCAGTGAGGTTTGTTCTCGCGCATCAAGCAAGCACGGTTGAGCTTCTGTATACTTTTTTTGTGCACAAAAACAAAAATAACTTTATTCAGTTATTTCTTCTCTCCCGTCATTCTCCTACGCTATTTTTGTTGCAGTGCTTCCAGGTTCTACATCAGAATGCCGGCTCAGTATTGACCGTTCACGTGAGCAGCATGACGCATGCGTGTGATGTTGACACAGGAACTGGCCAATACTGAAAAAAAGTATTTTCATCGCTTCATATCATTAATGTTGAACCACTGTAGTCACGTCAAAAAAAAAAAAAAAAAATTGGATGACCAGTAATTTCCTACTACTAAATTCAGACAAAACAGAGATTATAATTTTTGGACCAAAAACTTCTTCACGTAATAACCTAGAATACTGTCTAACACTTGATGGCTGCTCTGTTAAATCTTCGTCGTCACTTAGGAATCTGGGTGTGCTCTTTGATACCAATCTTTCATTTGAAGGCCATGTTACTAGCATCTGTAAAACCGCATTCTTCCATCTTAAAAATATATCTAAACTACGACATATGCTCTCAATGAAAAATGCAGAACAGTTAGTTCATGCGTTCATGACCTCAAGGCTAGATTACTGTAATGCTCTACTGGGTGGTTGTTCTGCTCGCTTGATAAATAAACTACAGCTCGTACAAAATGCAGCAGCTAGAGTTCTTACTAGAACTAGGAAGTATGACCATATTAGCCCAGTTCTGTCAACACTGCATTGGCTTCCTGTTAAACATCGTATAGATTTTAAAATCTTGCTAATTACTTACAAAGCACTAAATGGTTTAGCTCCCCAGTACCTGAGCGAGCTCCTAATTCATTATAGTCCTTCACGTCTATTGCGATCTCAGAATTCAGGCCAGCTGATAATACCTGGAATATCAAAATCAACCGCAGGCGGTAGATCCTTCTCCTATTTGGN

Function

NR:

description
PREDICTED: protein LDOC1-like, partial

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU188086 True 2892 TUCP 0.41 3 1349578 1357567

Neighbor

gene id symbol gene type direction distance location
CI01000032_01293850_01336978 ATRX coding upstream 12410 1293850 ~ 1337168 (+)
CI01000032_01290025_01292308 NA coding upstream 57270 1289334 ~ 1292308 (+)
CI01000032_01279596_01288916 NUP62L coding upstream 60583 1279221 ~ 1288995 (+)
CI01000032_01251696_01259949 CNGA2, CNGA5 coding upstream 89330 1251347 ~ 1260248 (+)
CI01000032_01238397_01244212 NA coding upstream 105217 1237966 ~ 1244361 (+)
CI01000032_01441770_01450965 ZDHHC15, ZDHHC15B coding downstream 83442 1441009 ~ 1451723 (+)
CI01000032_01469232_01488085 NA coding downstream 111324 1468891 ~ 1488425 (+)
CI01000032_01540330_01542854 NA coding downstream 175835 1533402 ~ 1542889 (+)
CI01000032_01602807_01606708 NA coding downstream 244897 1602464 ~ 1606912 (+)
CI01000032_01614652_01616848 NA coding downstream 256870 1614437 ~ 1616974 (+)
G165587 NA non-coding upstream 86955 1262388 ~ 1262623 (+)
G165580 NA non-coding upstream 88442 1260751 ~ 1261136 (+)
G165564 NA non-coding upstream 147508 1201830 ~ 1202070 (+)
G165508 NA non-coding upstream 236686 1108413 ~ 1112892 (+)
G165505 NA non-coding upstream 247052 1099618 ~ 1102526 (+)
G165608 NA non-coding downstream 376 1357943 ~ 1358579 (+)
G165610 NA non-coding downstream 1821 1359388 ~ 1359666 (+)
G165611 NA non-coding downstream 4486 1362053 ~ 1362315 (+)
G165619 NA non-coding downstream 25305 1382872 ~ 1383122 (+)
G165626 NA non-coding downstream 38119 1395686 ~ 1395944 (+)
CI01000032_01698448_01701006 NA other downstream 340921 1698448 ~ 1701288 (+)
CI01000032_02773889_02774396 NA other downstream 1401165 2773889 ~ 2774501 (+)
G166734 NA other downstream 1477747 2835314 ~ 2849684 (+)
G166765 NA other downstream 1599221 2956788 ~ 2957213 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G179753 NA non-coding NC_053128.1 CM020925.1 32444118 ~ 32446914 (-)
tiger barb (Puntius tetrazona) G164485 NA non-coding NC_056722.1 CM032091.1 20563233 ~ 20563514 (-)