G166734


Basic Information

Item Value
gene id G166734
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 2835314 ~ 2849684 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU189422
GGCCACATTCATTTACACGATATACTGATTCACGACCTGGGAAGCTAGGGAGCTGATTGAGACGCACGTCCAGTTGGTGGCGGTAATACACCATAAGTTGGCTTGTCAACCGCCTTTAAACTGTACAAGAAGAAGAAGCCTTCGAAATGAAACGCAGAACAAGCTGATAACACTACGCATGTGCGGCTCAACACCACAACTACAGCATGGCTGAGCCTGGGCAGAAACACGCGTTGGAGATGGTACGGACAGATGGAGCAGATGAGGGTTGTGTGACGTTTGTGCTCCATGAAGAGGACCACACACTCGGCAACTCGCTCAGATACATGATCATAAAGAGTCAGGATGTGGAATTCTGTGGATACAGCATCACACACCCATCAGAAAGCAAAATCAACTTTCGGATACAAACGCGAGAAGGAATTCCAGCAACTGAACCTCTGCGCAATGGGCTGAACAACCTGACTGAAGTGTGCAAACATGTCTTGCAAACATTTGAGGCACGGATGAAAGCATTCAAGGAAAAAGAAGAATCAATGGCATGAAGATCAACACTTGTACAGTACCGGACATTGATCTGCTGATCCAGCTTCCTCAGGATTAAAGAATGTAGAAGCTTTAGGAAGGAATGGAATGTGTAGCTCTCAAGTAAATGACAGTCAAACATGTTCTTGGCAGTTCCACACGCATTTTGTATTTGTTTGAATTTGTATATTGATGTGATTATCCTTTTCTTTTCTTTTTTTGTGGGTACATGAACATTGGTAAATAGTGCCAGCGCACTAATAAGTTTCAGAACCTATAGCAATAGTATATATCCAGTAAAAAAAAAAAGTATGAAAATAGTTGTAAAAATGTATTTGATTCAGAATATGTTTTAAAATAACGCAAGTAATGCATTTTCAAATATAAAAATCACAGACAAAATGTCTTGGATTAATATTTACCAGCAGTGTTATGATACATCAAATAAGTGATACATGTGCTTTGATCTCACATTTTTCATTTTGATATAGCATTCCTGAACAATAATCAGTATGTATGTAATGTCTTTTGCAAGTCTTTATTCCTACTTTTTGAGAGAGAGCGAGAGAGCTTTTGCATGTAACGTTCTCGTGCCACATGTGGAATTAAAAGCATAGTTTACCC
>TU189420
CTGATAACACTACGCATGTGCGGCTCAACACCACAACTACAGCATGGCTGAGCCTGGGCAGAAACACGCGTTGGAGATGGTACGGACAGATGGAGCAGATGAGGGTTGTGTGACGTTTGTGCTCCATGAAGAGGACCACACACTCGGCAACTCGCTCAGATACATGATCATAAAGAGTCAGGATGTGGAATTCTGTGGATACAGCATCACACACCCATCAGAAAGCAAAATCAACTTTCGGATACAAACGCGAGAAGGAATTCCAGCAACTGAACCTCTGCGCAATGGGCTGAACAACCTGACTGAAGTGTGCAAACATGTCTTGCAAACATTTGAGGCACGGATGAAAGCATTCAAGGAAAAAGAAGAATCAATGGCATGAAGATCAACACTTGTACAGTACCGGACATTGATCTGCTGATCCAGCTTCCTCAGGATTAAAGAATGTAGAAGCTTTAGGAAGGAATGGAATGTGTAGCTCTCAAGTAAATGACAGTCAAACATGTTCTTGGCAGTTCCACACGCATTTTGTATTTGTTTGAATTTGTATATTGATGTGATTATCCTTTTCTTTTCTTTTTTTGTGGGTACATGAACATTGGTAAATAGTGCCAGCGCACTAATAAGTTTCAGAACCTATAGCAATAGTATATATCCAGTAAAAAAAAAAAGTATGAAAATAGTTGTAAAAATGTATTTGATTCAGAATATGTTTTAAAATAACGCAAGTAATGCATTTTCAAATATAAAAATCACAGACAAAATGTCTTGGATTAATATTTACCAGCAGTGTTATGATACATCAAATAAGTGATACATGTGCTTTGATCTCACATTTTTCATTTTGATATAGCATTCCTGAACAATAATCAGTATGTATGTAATGTCTTTTGCAAGTCTTTATTCCTACTTTTTGAGAGAGAGCGAGAGAGCTTTTGCATGTAACGTTCTCGTGCCACATGTGGAATTAAAAGCATAGTTTACCCAAAAAAGAGAGTTCTGTCATTTACTACCAGAATTGTTTATCAGCATTCTTGAAAATGAAAATGTAAGTTAATGACAGATTTTTCTTTTGTCATCAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU189422 False 1149 TUCP 0.40 6 2835314 2849587
TU189420 True 1083 TUCP 0.37 5 2835622 2849684

Neighbor

gene id symbol gene type direction distance location
CI01000032_02827399_02829641 NA coding upstream 5596 2827399 ~ 2829718 (+)
CI01000032_02773889_02774396 NA coding upstream 60813 2773889 ~ 2774501 (+)
CI01000032_02768103_02768518 NA coding upstream 66796 2767994 ~ 2768518 (+)
CI01000032_02660718_02684072 ARHGEF9 coding upstream 151096 2660718 ~ 2684218 (+)
CI01000032_02631785_02635555 NA coding upstream 199329 2630508 ~ 2635985 (+)
CI01000032_02857743_02864895 SYBL1, VAMP7 coding downstream 7229 2856913 ~ 2864975 (+)
CI01000032_03046961_03053202 RRAGA.L, RRAGB, RRAGA, MGC78980 coding downstream 197277 3046961 ~ 3053926 (+)
CI01000032_03083089_03083664 NA coding downstream 232299 3081983 ~ 3084146 (+)
CI01000032_03142737_03156736 NA coding downstream 292058 3141742 ~ 3158789 (+)
CI01000032_03168377_03169554 NA coding downstream 318597 3168281 ~ 3169747 (+)
G165948 NA non-coding upstream 45235 2789852 ~ 2790079 (+)
G165847 NA non-coding upstream 99117 2732418 ~ 2736197 (+)
G165940 NA non-coding upstream 108324 2726764 ~ 2726990 (+)
G165906 NA non-coding upstream 292619 2542466 ~ 2542695 (+)
G166738 NA non-coding downstream 38162 2887846 ~ 2890042 (+)
G166760 NA non-coding downstream 102960 2952644 ~ 2952881 (+)
G166763 NA non-coding downstream 105969 2955653 ~ 2955895 (+)
G166766 NA non-coding downstream 107733 2957417 ~ 2957680 (+)
G166767 NA non-coding downstream 108120 2957804 ~ 2958119 (+)
CI01000032_01698448_01701006 NA other upstream 1134026 1698448 ~ 1701288 (+)
G165570 NA other upstream 1477747 1349578 ~ 1357567 (+)
G166765 NA other downstream 107104 2956788 ~ 2957213 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007722 polr1d coding NC_007125.7 CM002898.2 9077314 ~ 9085349 (-)