CI01000032_02660718_02684072 (ARHGEF9)


Basic Information

Item Value
gene id CI01000032_02660718_02684072
gene name ARHGEF9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 2660718 ~ 2684218 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000032_02660718_02684072.mRNA
ATGAATCTCTATGATAAGGCTCAAAGGGGTACCTTTGAGGGTGCCACTCCAGTGAGAAGCAGTTGTAATGCTACATTGATCAGCGGAGGTTCAGTGGTCAGCGCAGAGGCAGTATGGGATCACGTGACCATGGCCGAGAGGGAGTTGGCGTTTAAGGCGGGAGACGTCATCAAAGTCCTGGATGCCTCCAATAAAGACTGGTGGTGGGGTCAAATCGATGACGAGGAGGGCTGGTTCCCCGCCAGCTTTGTGAGGGTTGATCCCCACCCTCCTCAACCTTACACAAAACCAGTTTTCTATATCAACCCTATAGCAACTCCAAGGTTCCATAACACAACAGCAAAGCTATGGGTTAACCAGGAAAATGCAGCCACAGAATCAACTGAGGGTGCCAGTGAGGTGCAGAATGGACACACTGACCCGAGCAATGGCTGTCTGTGCATTGGCCAACCACTTCAGAACCGAGATCAGATGAGGGCCAACGTTATCAACGAGATCATGAGCACTGAGCGTCACTATATCAAACACCTGAAGGACATATGTGAGGGCTACTTGAGGCAGTGCAGAAAGAGGATTGACATGTTCAATGATGACCAACTGAAAGTGATTTTTGGTAACATTGAGGATATCTACAGATTTCAAATGGGATTTGTGCGGGACTTGGAGAAACAGTACAACATTGAGGAACCCCATCTTAGTGAAATTGGACCGTGTTTTCTGGAACATCAAGATGGTTTCTGGATCTATTCAGAGTATTGCAACAACCACCTTGATGCCTGCATGGAGCTCTCCAAGCTGATGAAGGATGGGCGCTATCAGCACTTTTTTGAAGCCTGTCGCCTCCTCCAGCAGATGATCGACATCGCCATTGATGGCTTCCTCCTCACCCCTGTGCAGAAGATCTGCAAGTACCCACTACAACTTGCAGAGTTACTCAAGTACACAGCACAGGAACATAGTGATTACCGCTATGTGGCAGCAGCACTTGCAGTCATGAGGAACGTCACCCAGCAAATTAATGAGCGCAAAAGAAGACTGGAGAACATTGACAAGATCGCCCAATGGCAAGCCTCAGTGTTGGACTGGGAGGGTGATGACATTCTGGACAGAAGTTCAGAGCTGATCTACACGGGTGAGATGTCATGGATCTATCAGCCTTATGGCAGGAGTCAGCAGCGAGTCTTCTTCCTTTTTGATCATCAGCTGGTCTTGTGCAAAAAGGACCTGATACGACGGGACATACTTTACTACAAAGGACGTATTGACATGGATAGGTATACAGTGAGAGATGCTATTGATGGACGGGACGACGACTTTAACGTCAGTGTGAAAAATGCTTTCAAGCTGCACAACAGAGACAGCGACGAGATTCACATCTTTCTGGCCAAGAAACCAGAAGAGAAGATTCGCTGGCTGAGGGCTTTCCATGAGGAGCGCAAGATGGTCCAAGAGGATGAAAAAATTGGTTTTGAAATTTCTGAATATCAGAAACGACAAGCTGCCATGACAGTGCGTAAAGTGACCAAACAGAAAGTCATTGTCAGCGTTTGGACAGTATCTAAGAAAACTGTCAGAATTACAGTAATTCCATATTGTCACAGTATCTCTACTCAACACTTTCAGTAATAATAATGAGCCTTTTTTTCTAAAATACATAGCGCATTCATGTTGCATTGTTTGCATACAAGGCTTTACAGCTGAATGAGATAAGGTTATAATCAAATGCCCTCTCAGAGAATGTATTATCATTCGAATGTAGCACTGCAAGTCCA

Function

symbol description
arhgef9 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of postsynaptic specialization assembly. Located in cytosol. Implicated in developmental and epileptic encephalopathy 8.

GO: NA

KEGG:

id description
K20686 ARHGEF9; Rho guanine nucleotide exchange factor 9

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000032_02660718_02684072.mRNA True 1772 mRNA 0.46 11 2660718 2684218

Neighbor

gene id symbol gene type direction distance location
CI01000032_02631785_02635555 NA coding upstream 24733 2630508 ~ 2635985 (+)
CI01000032_02593980_02599978 ASB12B coding upstream 60188 2593006 ~ 2600530 (+)
CI01000032_02522753_02527262 FAM46D coding upstream 132892 2522753 ~ 2527826 (+)
CI01000032_02451472_02465595 TBX22 coding upstream 194340 2451472 ~ 2466378 (+)
CI01000032_02425512_02426806 NA coding upstream 233763 2425512 ~ 2426955 (+)
CI01000032_02768103_02768518 NA coding downstream 83776 2767994 ~ 2768518 (+)
CI01000032_02773889_02774396 NA coding downstream 89671 2773889 ~ 2774501 (+)
CI01000032_02827399_02829641 NA coding downstream 143181 2827399 ~ 2829718 (+)
CI01000032_02857743_02864895 SYBL1, VAMP7 coding downstream 172695 2856913 ~ 2864975 (+)
CI01000032_03046961_03053202 RRAGA.L, RRAGB, RRAGA, MGC78980 coding downstream 362743 3046961 ~ 3053926 (+)
G165906 NA non-coding upstream 118023 2542466 ~ 2542695 (+)
G165894 NA non-coding upstream 178310 2482138 ~ 2482408 (+)
G165889 NA non-coding upstream 212367 2448131 ~ 2448351 (+)
G165880 NA non-coding upstream 215826 2392530 ~ 2444892 (+)
G165940 NA non-coding downstream 42546 2726764 ~ 2726990 (+)
G165847 NA non-coding downstream 48200 2732418 ~ 2736197 (+)
G165948 NA non-coding downstream 105634 2789852 ~ 2790079 (+)
G166738 NA non-coding downstream 203628 2887846 ~ 2890042 (+)
CI01000032_01698448_01701006 NA other upstream 959430 1698448 ~ 1701288 (+)
G165570 NA other upstream 1303151 1349578 ~ 1357567 (+)
G166734 NA other downstream 151096 2835314 ~ 2849684 (+)
G166765 NA other downstream 272570 2956788 ~ 2957213 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007724 arhgef9b coding NC_007125.7 CM002898.2 9142162 ~ 9199968 (-)