CI01000032_02593980_02599978 (ASB12B)


Basic Information

Item Value
gene id CI01000032_02593980_02599978
gene name ASB12B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 2593006 ~ 2600530 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000032_02593980_02599978.mRNA
CTATATATAGTGGACACCAGAGTTAGTTCACAGTGGAATCACAGTGGACAGATGTAACACTGTAATTTACAGTAATTTTCAAAATCTGTGCAGACATTAACATTAGTGTATAGTCCACATTCCTGCAAAAAGTTGTTTTAAATGAGACTTTGTTTTAAATTTACTTCCTCCTCTTTCATTGTGAATAGATTGTTATTCCTTTCTGATCATGAACTGTGTCTGTTTTCTAAATATTATTGTTATTTTTTTTTTTTTTTTCATTGTCAAATTAACATTTTTTTTTTTTTTTTTTTTCCTTTGGGACATGATAATATGTCAGGTAGCTCAGATAATAAATTTAAAAAAAAAAAAAAATACTGAACATACATTAACATATAGCATACATTACAAATATTTAAAAATTATCAGAGTAAATTAAACATATATAATATATACATAATACATAAATATATGAAATATGTTAGTATATCTAATGTAAATGTTTACCCAGTATCTAATTAAGCACATTAAAACTGAGTTCTGTACCGAGCACAAGGACAGTTTTACCAAAAAGCATTCGGTGGAAATGAGAGATTGTCACTCACCCGATTTGCACAAAAACACTGACTCAGTAACGAAGCACCGATACTTTGCTGCTCAGAGACATGCAACGGTTGATCCTGTTTTGTTTGGAACTAAATAAAAATAGACAAAGTAATCAAAAATAGACAAAGTAACTGGTGATGCTGTGTCTAAAAAGTAAGTTACTCAATATTAACTTTGTTTATGAAAGCAATATCTCTAGCTCTAAATATCAGCAAGGCTGTTAAGTGTGGCTGTGAAATTGAAAACAAAAGGAAGATTGTGAGTGTTCTTTGCTTTTTTTATGTTGTAGAGCTTGAGAGTAATTTTAATTCTTTCTTTCTTGCTGTCTGTTTGATCGAATGGAGACTTGAGCAGTTTGCTGAAGAATGCTTTTGGATAAGTCCACCAGCATGAGTTTGATGGACATCTCTAAGATCTTTTCTCTTCTTCAACCCAAAGAGGATGAGGAGGAAGACACCAACTGTTGCCAGGAACTGAATCAAGCTGTCTTTAAGGATGACGACAAACTCCTTACTGATCTCCTGTCTCAGGATAAGTACAGGAAATGCATCAACCATCGCAGTGGCTGGGGCATCCCAGTTACTCCACTGCGCACTGCTGCGGCTCAGGGTCACTTGCGCTGTCTAGAGGTCCTCCTGGCTCATGGGGCAGAGGTGGACAGCCTGGATGTTAAAGCTCAGACTCCACTTTTCACGGCCGTCGCTGCCAAACACTTAGACTGTGTTGTTGCTTTATTAGAAGCTGGTGCAAACCCTAATGGTAGCCTGTATAACAACTGCTCCCCTGTGCTCACTGCAGCCCGAGAGGGTGACGTAGACATCCTGAGGGAGCTCCTGCGACATGGAGCCGACGTAGATGTCAAGCCCAAAATGCCGGACTGGGCCTCAAACGCCACGACCTGCCGAGGACCACTCTACATTTCAGCTGTTTATGGCCATCTGGATTGCTTCAAATTGTTACTGCAGCATGGAGCGAACCCAGACTACAACTGCACTGAGGAAAAGATGCTGACCAGGATCAAACAGCCTAAAACTGTTCTGGAGATGTGTCTGAGATATGGCTGTGGGCTAGAATACATTAAGCTGCTCATAGACTTTGGAGCAAACGTGTATCTACCCACTTTAATCATTGACAAAACAGCCAGACAAAATGAAGCAGTAATGCTTCTGCTGAAAGAGAGAGTTTGTCCAAAAACACTGATGTCTCAGACGCGACTTGCTTTATGGAAGTTTCTTCCCACGGAAAACAAAATGTGCTCCATAGATTGTCTGGACATTCCCAAAATACTGAAGGACTATTTGAATCATGTATCCTGATTTTCCTGCATTTTCCCTTCTTATGTGGAATACACAACATAAAAATTTGACTAATATTATTTTCCCTTTTTGTAAAATGTTGTTGTGATATGTAATATTTTTAATATTTTCTTTATGAAGAATTCTAAATATTACAGATAATGGTTTATACAGGAATGGCTTTATTATTTTTAACAAATAATTTATGAATATGTGGTTAATGCAACAAATGAAAAGACTTTCAGACTTGTTTGTTCCTATTGTAGGTTAGGTTCTTGTTTTGTTGATGTAATGTAGAGTCAATTAATATGAAAGATAAACTGGTTGAAATGATTACTGTCTTGTGGTGACCCTCGACAAGATGGTTACTGTTCCATGGTTGAACCAGCTAGTCAAGTAAACTCCTTAATTTTGGCTGGTGGCAGGTTTGTTGATGCAGAGTCGCTTCTGAACTCTGCAAGACTGTGGCCCTCCAGGAGCTGAGTTTGACACCCCGGATCTACACTGAACTTTAGAAGATCTCCAAAAAAAAAAAAAAAAAAAATTCCAATAAGTGGGTCTGAAATCTATTTA

Function

symbol description
asb12b Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be part of ubiquitin ligase complex. Orthologous to human ASB12 (ankyrin repeat and SOCS box containing 12).

NR:

description
ankyrin repeat and SOCS box-containing protein 12-like

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10334 ASB12; ankyrin repeat and SOCS box protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000032_02593980_02599978.mRNA True 2453 mRNA 0.37 2 2593006 2600530

Neighbor

gene id symbol gene type direction distance location
CI01000032_02522753_02527262 FAM46D coding upstream 65180 2522753 ~ 2527826 (+)
CI01000032_02451472_02465595 TBX22 coding upstream 126628 2451472 ~ 2466378 (+)
CI01000032_02425512_02426806 NA coding upstream 166051 2425512 ~ 2426955 (+)
CI01000032_02408022_02408243 NA coding upstream 184714 2408022 ~ 2408292 (+)
CI01000032_02308962_02317494 MYOT coding upstream 275512 2308962 ~ 2317494 (+)
CI01000032_02631785_02635555 NA coding downstream 29978 2630508 ~ 2635985 (+)
CI01000032_02660718_02684072 ARHGEF9 coding downstream 60188 2660718 ~ 2684218 (+)
CI01000032_02768103_02768518 NA coding downstream 167464 2767994 ~ 2768518 (+)
CI01000032_02773889_02774396 NA coding downstream 173359 2773889 ~ 2774501 (+)
CI01000032_02827399_02829641 NA coding downstream 226869 2827399 ~ 2829718 (+)
G165906 NA non-coding upstream 50311 2542466 ~ 2542695 (+)
G165894 NA non-coding upstream 110598 2482138 ~ 2482408 (+)
G165889 NA non-coding upstream 144655 2448131 ~ 2448351 (+)
G165880 NA non-coding upstream 148114 2392530 ~ 2444892 (+)
G165940 NA non-coding downstream 126234 2726764 ~ 2726990 (+)
G165847 NA non-coding downstream 131888 2732418 ~ 2736197 (+)
G165948 NA non-coding downstream 189322 2789852 ~ 2790079 (+)
G166738 NA non-coding downstream 287316 2887846 ~ 2890042 (+)
CI01000032_01698448_01701006 NA other upstream 891718 1698448 ~ 1701288 (+)
G165570 NA other upstream 1235439 1349578 ~ 1357567 (+)
G166734 NA other downstream 234784 2835314 ~ 2849684 (+)
G166765 NA other downstream 356258 2956788 ~ 2957213 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007725 asb12b coding NC_007125.7 CM002898.2 9265741 ~ 9281232 (-)