G165880


Basic Information

Item Value
gene id G165880
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 2392530 ~ 2444892 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU188437
CTGTATAGGGCATAAGGCTAGTGTAATTTCCTGCTCCATCTATATTGTAAATAACCACAGCAGAGGCTCCATGTCGCTGGGCAGCCTTTATCTTCCATGAATAGGTACAGTTTCCATTTTTTATCAGGGCAATCCATGGCTGGTGACTTGAGGTGAAAGTAGTGTTTCTTGAGCATGCCAGAGGATCCGTATTAGGAAGCACTATTAGTCCAGAAGCTGGTTCCAAGGGTGAGTTTTGTCCAAACGCACCACACTCACATACACTGCTTATAGTTTCATTAGATTCTCTGTCAAAGTATCTAACGTCCACATAGGCAGTCCAGTAAATCAAGGAAGCACTTTGTTGGAAACAGTACTGGAAAACCAATACTGTCAACCAGATACATGAATGGCCATGTCCATGCATTGCTCTAAGCATTGCTTTCATTGCATCAGGTAAACACTCCTGTGTCTTGGCATTACTCTAATGTGGTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU188437 True 476 lncRNA 0.43 2 2392530 2444892

Neighbor

gene id symbol gene type direction distance location
CI01000032_02308962_02317494 MYOT coding upstream 75036 2308962 ~ 2317494 (+)
CI01000032_02232176_02233727 NA coding upstream 158800 2231644 ~ 2233730 (+)
CI01000032_02201573_02204528 NA coding upstream 186925 2201471 ~ 2205605 (+)
CI01000032_02130148_02154109 KCTD12B, KCTD12 coding upstream 238421 2130148 ~ 2154109 (+)
CI01000032_02015472_02032776 FRMPD3 coding upstream 358881 2015472 ~ 2033649 (+)
CI01000032_02451472_02465595 TBX22 coding downstream 6580 2451472 ~ 2466378 (+)
CI01000032_02522753_02527262 FAM46D coding downstream 77861 2522753 ~ 2527826 (+)
CI01000032_02593980_02599978 ASB12B coding downstream 148114 2593006 ~ 2600530 (+)
CI01000032_02631785_02635555 NA coding downstream 185616 2630508 ~ 2635985 (+)
CI01000032_02660718_02684072 ARHGEF9 coding downstream 215826 2660718 ~ 2684218 (+)
G165874 NA non-coding upstream 22368 2369838 ~ 2370162 (+)
G165873 NA non-coding upstream 23375 2368927 ~ 2369155 (+)
G165804 NA non-coding upstream 51447 2184072 ~ 2341083 (+)
G165859 NA non-coding upstream 112000 2280032 ~ 2280530 (+)
G165807 NA non-coding upstream 118349 2268383 ~ 2274181 (+)
G165889 NA non-coding downstream 3239 2448131 ~ 2448351 (+)
G165894 NA non-coding downstream 37246 2482138 ~ 2482408 (+)
G165906 NA non-coding downstream 97574 2542466 ~ 2542695 (+)
G165940 NA non-coding downstream 281872 2726764 ~ 2726990 (+)
G165847 NA non-coding downstream 287526 2732418 ~ 2736197 (+)
CI01000032_01698448_01701006 NA other upstream 691242 1698448 ~ 1701288 (+)
G165570 NA other upstream 1034963 1349578 ~ 1357567 (+)
CI01000032_02773889_02774396 NA other downstream 313840 2773889 ~ 2774501 (+)
G166734 NA other downstream 390422 2835314 ~ 2849684 (+)
G166765 NA other downstream 511896 2956788 ~ 2957213 (+)

Expression


Co-expression Network