Gene
RNA
| Item | Value |
|---|---|
| gene id | G165807 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000032 |
| NCBI id | null |
| chromosome length | 4185905 |
| location | 2268383 ~ 2274181 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU188349 | False | 635 | lncRNA | 0.49 | 5 | 2268383 | 2274181 |
| TU188348 | True | 698 | lncRNA | 0.46 | 3 | 2270051 | 2274181 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000032_02232176_02233727 | NA | coding | upstream | 34653 | 2231644 ~ 2233730 (+) |
| CI01000032_02201573_02204528 | NA | coding | upstream | 62778 | 2201471 ~ 2205605 (+) |
| CI01000032_02130148_02154109 | KCTD12B, KCTD12 | coding | upstream | 114274 | 2130148 ~ 2154109 (+) |
| CI01000032_02015472_02032776 | FRMPD3 | coding | upstream | 234734 | 2015472 ~ 2033649 (+) |
| CI01000032_01743751_01746492 | NA | coding | upstream | 521867 | 1743751 ~ 1746516 (+) |
| CI01000032_02308962_02317494 | MYOT | coding | downstream | 34781 | 2308962 ~ 2317494 (+) |
| CI01000032_02408022_02408243 | NA | coding | downstream | 133841 | 2408022 ~ 2408292 (+) |
| CI01000032_02425512_02426806 | NA | coding | downstream | 151331 | 2425512 ~ 2426955 (+) |
| CI01000032_02451472_02465595 | TBX22 | coding | downstream | 177291 | 2451472 ~ 2466378 (+) |
| CI01000032_02522753_02527262 | FAM46D | coding | downstream | 248572 | 2522753 ~ 2527826 (+) |
| G165813 | NA | non-coding | upstream | 95229 | 2172938 ~ 2173154 (+) |
| G165797 | NA | non-coding | upstream | 111645 | 2156515 ~ 2156738 (+) |
| G165711 | NA | non-coding | upstream | 145880 | 2121671 ~ 2122503 (+) |
| G165707 | NA | non-coding | upstream | 156175 | 2109321 ~ 2112208 (+) |
| G165773 | NA | non-coding | upstream | 171636 | 2096470 ~ 2096747 (+) |
| G165859 | NA | non-coding | downstream | 5851 | 2280032 ~ 2280530 (+) |
| G165873 | NA | non-coding | downstream | 94746 | 2368927 ~ 2369155 (+) |
| G165874 | NA | non-coding | downstream | 95657 | 2369838 ~ 2370162 (+) |
| G165880 | NA | non-coding | downstream | 118349 | 2392530 ~ 2444892 (+) |
| CI01000032_01698448_01701006 | NA | other | upstream | 567095 | 1698448 ~ 1701288 (+) |
| G165570 | NA | other | upstream | 910816 | 1349578 ~ 1357567 (+) |
| CI01000032_02773889_02774396 | NA | other | downstream | 484551 | 2773889 ~ 2774501 (+) |
| G166734 | NA | other | downstream | 561133 | 2835314 ~ 2849684 (+) |
| G166765 | NA | other | downstream | 682607 | 2956788 ~ 2957213 (+) |
