CI01000032_02451472_02465595 (TBX22)


Basic Information

Item Value
gene id CI01000032_02451472_02465595
gene name TBX22
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 2451472 ~ 2466378 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000032_02451472_02465595.mRNA
AATGCAGGGAATCAGCACGCGAGCTCACGCAATTTCTGTGTATGCCTCTGGGAAAAGTTGCAAGAAGATGAAGGTGGAAAATATGAAGAATGAGAAGTTTCAGTATGTTTTGGAATATGACAGAGATACACCGACAGGAACTGTCATCGACCCACAGGATCAGCGAAACGACAGGAAGAAAAAAAGCGTGAAGCTAAGAAAGCCTGCAGGGACAGAATCTGAAGCTGCGAGAGAAGTTCGAGTAGATCTTCAAGGATCTGACCTGTGGAAGAGATTTCATGAGATCGGCACAGAGATGATCATCACGAAAGTTGGGAGGAGAATGTTCCCCTCTGTCCGAGTCAAGGTGCACAATCTGGATCCCTTCCAGCAATACTCCATTGCCATGGACATCATGCCTGTGGACTCAAAGAGATACAGGTATATATACCACAGCTCTCAATGGATGGTGGCTGGAAACACAGATCATTCATGTATCTCCCCTCATCTGTATGTCCACCCGGACTCGCCGTGTTCCGGAGAGAACTGGATGAGACAGGTGATTAGCTTTGATCGTGTCAAACTCACCAACAATGAGATGGATGACAAAGGCCATATAATCCTGAAGTCTATGCACAAGTACAAGCCACGCATACACGTTATTCTGCATAGTCCTCTTGAATGCGTGTCACAGACTCTACTATCACTGCCAACAGAGGGTGTGTACACCTTCTCCTTCCCTGAGACTCAGTTCACCACTGTCACAGCCTACCAAAACCAACAGATAACAAAACTGAAGATTGACAGGAATCCTTTTGCCAAGGGCTTCAGGGAACGAAATGGCTCCTTTGCTCAAGCAGTCCATCCTATCACATTCTCAAGCCCTCAATGCTGCAAGATTTTCCCTTCAAACAGTTTTCAAACATACAGAGCCTATTGCAACATTTGCCTGGGCAAACTTAATAGTTACACTGGCTTGCGACCCATGTTAGACCTTCCCTTCATGACTAATAAAAAGAAAGGAGACATCTGTAGGAGTCACTGGCTCCATGATTCCACCACCACAAGTACTTCTGTGCATCCTATCCATAACATTTCGGCTGGATGGACCTCTGGACACTATCAATCTAAAAATGAAAATATGGCATCAGCCTTTGTGTCACCCTACAGCTACAGTTTCCCCATGAGGCACCAATTCTCTACTGTTGCTCATTTAAAACTGGCTCATGGTGAGAGCCCTGTTCACCAAATGCCCATGATCTCCTCAAACTGTTACTGTCCCTGACTCCAAACCTGTCAAAACCCATACTCTAGAACTGCAAGCCCAGTTGTCTAAATTAGAAAAAAAAAAAAAAGTTCATAAAACTCAAAACAGTGAAACAATTCAGATTACTTAAAATGTGTCAGTTTTGTGAAAAACTGAAAAGAAAGTTCTAAATACTCATAAAAGTTAATTTGATTGAACTAATTTGTTTAATTCAAGTTTACCCTACTCAAGCCAATTATTTTGAGCATTAGGGTTTACAGTGCTACTTGTATTTACTGTAAATAGGTGCAATTTTTCTGTATCTGCCCTCTTATACCAAATGTACCAAAATGAAACAAAAACTATTTACCCCCTTTTAATAAATGTGACCCTGGATCACAAAACCAGTCATAAGTGTCAATTTTTTGAAAAATCATCTGAAAGCTGAATAAATAAGTTTTCCATTGGTTTGTTAGGATAGGACAATATTTGGCTGAGATACAACAGATTTTTGAAAATCTGGAATCTGAGGGTGCAAAACAAAATCAAAATATTGAGAAAATCACCTTTAAAGTTGTCCAAATGAAGTCCTTAGTAATAAATATCCACTCACAAAAATAAATTTTTGATATATTTACAGTAGGAAATTTACAAAATATCTCCATGGAACACGATCTTTACTTAATATCCTAATGATTTTTGGCATAAAAGAAAAATCGATCATTTTCACCCATACAATATTGTTAGCTATTGCTACAAATATACCTGTGCTACTTGTGACTGGTTTTGTGGTCCAGGGTCACAAATATAAATACGATAAAA

Function

symbol description
tbx22 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate specification; heart looping; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in mandibular arch skeleton; maxilla; paraxial mesoderm; and stomodeum. Human ortholog(s) of this gene implicated in Abruzzo-Erickson syndrome; X-linked cleft palate with or without ankyloglossia; and cleft palate. Orthologous to human TBX22 (T-box transcription factor 22).

NR:

description
transcription factor Tbx22-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000032_02451472_02465595.mRNA True 2047 mRNA 0.40 7 2451472 2466378

Neighbor

gene id symbol gene type direction distance location
CI01000032_02425512_02426806 NA coding upstream 24517 2425512 ~ 2426955 (+)
CI01000032_02408022_02408243 NA coding upstream 43180 2408022 ~ 2408292 (+)
CI01000032_02308962_02317494 MYOT coding upstream 133978 2308962 ~ 2317494 (+)
CI01000032_02232176_02233727 NA coding upstream 217742 2231644 ~ 2233730 (+)
CI01000032_02201573_02204528 NA coding upstream 245867 2201471 ~ 2205605 (+)
CI01000032_02522753_02527262 FAM46D coding downstream 56375 2522753 ~ 2527826 (+)
CI01000032_02593980_02599978 ASB12B coding downstream 126628 2593006 ~ 2600530 (+)
CI01000032_02631785_02635555 NA coding downstream 164130 2630508 ~ 2635985 (+)
CI01000032_02660718_02684072 ARHGEF9 coding downstream 194340 2660718 ~ 2684218 (+)
CI01000032_02768103_02768518 NA coding downstream 301616 2767994 ~ 2768518 (+)
G165889 NA non-coding upstream 3121 2448131 ~ 2448351 (+)
G165880 NA non-coding upstream 6580 2392530 ~ 2444892 (+)
G165874 NA non-coding upstream 81310 2369838 ~ 2370162 (+)
G165873 NA non-coding upstream 82317 2368927 ~ 2369155 (+)
G165894 NA non-coding downstream 15760 2482138 ~ 2482408 (+)
G165906 NA non-coding downstream 76088 2542466 ~ 2542695 (+)
G165940 NA non-coding downstream 260386 2726764 ~ 2726990 (+)
G165847 NA non-coding downstream 266040 2732418 ~ 2736197 (+)
G165948 NA non-coding downstream 323474 2789852 ~ 2790079 (+)
CI01000032_01698448_01701006 NA other upstream 750184 1698448 ~ 1701288 (+)
G165570 NA other upstream 1093905 1349578 ~ 1357567 (+)
CI01000032_02773889_02774396 NA other downstream 292354 2773889 ~ 2774501 (+)
G166734 NA other downstream 368936 2835314 ~ 2849684 (+)
G166765 NA other downstream 490410 2956788 ~ 2957213 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007727 tbx22 coding NC_007125.7 CM002898.2 9390850 ~ 9400556 (-)