CI01000032_02827399_02829641


Basic Information

Item Value
gene id CI01000032_02827399_02829641
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 2827399 ~ 2829718 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000032_02827399_02829641.mRNA
ATGTAAAGACACCAGTCAGGATGACCACCGCGACAATGCAGCAGCCTCACAACCTTCTCACTCAGATAGGGAGTCTGAGACTGAGACAGAGGGACCGAGTCAGACACTTCCGCCACTCGAACCGCCATGCTGCAGACACAGTTCTCCTGCTCGTGGGTCAGCCGCACCCCCGGCAGAGATGGAGGGAATCCCTGCCCCCCATCCACCTGTTGCTGCGGAGGAGAGGACACAAAAAGAGGCAGCAAATCCTGCTACCTATAGCTCAGATCCTGCATGTTGGGATAAAATTGATGAAGACAAGATGCGGACATATTGGATTAAAAAGGGACCTGAAAGTTGCCAGAACAAAGATGCAGATGTTGCTGCCTCCGAAAGGCAACATAAACACCAAAAACGGTACTTTTCCAAAACCCTGTTTAAAAGGAAACTGGCAAATGGTGAAACTCAGCCAAGAGAATGGCTTCTTTATTCCCCCTCAAAAGGCACCGTGTTTTGTTTCGCATGTAAATTATTTGGGGACAGTGACATTCAATCTGCACTGACAACAGGATATAGTGATTGGAAAAATGCAGCTGTGCTAGCTGAACATGAAGGATCAGAGAGCAACAGAAAGGCAATGCTCGCATATGTTATGCGCTGTGCTGATGGTGGGCAGATAGATTCAGAACTAAAAAAACAATTTGACAATGAATGTGAATATTGGGCTGAGGTTTTAAAGAGGGTGGTTGCGGTGGTGAAGTTTTTAGCAGAACAAGGACTACCGCTTAGGGGACACAGTGAAGTTTTTGGGCAACCGGATAATGGGAACTTTATGGGTGTGCTGGAAGTTATCAGTGAGTTTGATCCCTTTTTGAAATCCCATATAGAAAAATATGGCAATGCTGGAAAGGGAATGCCATCATACCTCTCATCAACAACATGCCTTGAATTTATTGAACTGATGGGAGAACAGGTCCTCGCAGAGATAATCAGTCAAATTAAAGTGGCAAAGTACTTTTCAATTAGTGTTGATTCCACTCCTGACATTACACACACCGACCAGCTCACATTCATCATGCGGTATGTGGCACCTGATGGCTGCATCGCAGAGCGTTTTATCAAGTTTCTGACAATCCAGAGTCATTCAGGAGAGTCGCTTTGCCAGTCTGTCCTTGGTGTTTTACAAGACTTGGGCATTGATGTCAGTAACTGCAGAGGCCAGTGTTATGACAACGCAGCCAACATGTCTGGTCTTTACAGTGGCCTACAAGCACGCATTAAACAGCGTTTCCACAAGACTAGTACTGCTTTACAGGCAGTTGACCTAGATTTATGTACTGCTGTTAATTTGGTCAGCTCGTTGAGGGATTATGTAGCCAGTCTTCGAGAAGAATTTGACAAGTTTGAGAGTGATGCAAAAAACATGTCTCCATCGTTGTCCCAACAAGTCTACAAAGTGGACATGCAGAGACACAGGAGAAGGAATAAACAAGTGGATGAATCCACTGAACCTGATTATGAGCAGTCAGGACGTGACAAATTTAAAACAACTGTTTTTATTGCCATCATAGACCGTCTCATTGCTGAGCTGGATAGGAGGTATCACTCCTACAAAGATATTCAGCAGACATTTGGATTTTTGAGCGAGATCCCATCCATCCCCCTACAAGATCTTTACACAGGAGCAGCTAATCTGCAGAAGAAATATGCAGGTGATCTAGAGGAGGATTTTGTGGATGAAATTTTTCAATTCAGACAATTTATCAAAGAAAACAAAGACACCTCAGCAAGGGCGCTGCTGCAACTTATAAGAGCAAGGAAACTACAATCAGTGTTTCCCAAATGTTGATATAGCACTCCGGCTATTTATGACTTTGCCTGTAACCAACGTCAGCGGGGAGCGCTCTTTTTCAAAACTGGGACTAA

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000032_02827399_02829641.mRNA False 1905 mRNA 0.45 2 2827399 2829718

Neighbor

gene id symbol gene type direction distance location
CI01000032_02773889_02774396 NA coding upstream 52898 2773889 ~ 2774501 (+)
CI01000032_02768103_02768518 NA coding upstream 58881 2767994 ~ 2768518 (+)
CI01000032_02660718_02684072 ARHGEF9 coding upstream 143181 2660718 ~ 2684218 (+)
CI01000032_02631785_02635555 NA coding upstream 191414 2630508 ~ 2635985 (+)
CI01000032_02593980_02599978 ASB12B coding upstream 226869 2593006 ~ 2600530 (+)
CI01000032_02857743_02864895 SYBL1, VAMP7 coding downstream 27195 2856913 ~ 2864975 (+)
CI01000032_03046961_03053202 RRAGA.L, RRAGB, RRAGA, MGC78980 coding downstream 217243 3046961 ~ 3053926 (+)
CI01000032_03083089_03083664 NA coding downstream 252265 3081983 ~ 3084146 (+)
CI01000032_03142737_03156736 NA coding downstream 312024 3141742 ~ 3158789 (+)
CI01000032_03168377_03169554 NA coding downstream 338563 3168281 ~ 3169747 (+)
G165948 NA non-coding upstream 37320 2789852 ~ 2790079 (+)
G165847 NA non-coding upstream 91202 2732418 ~ 2736197 (+)
G165940 NA non-coding upstream 100409 2726764 ~ 2726990 (+)
G165906 NA non-coding upstream 284704 2542466 ~ 2542695 (+)
G165894 NA non-coding upstream 344991 2482138 ~ 2482408 (+)
G166738 NA non-coding downstream 58128 2887846 ~ 2890042 (+)
G166760 NA non-coding downstream 122926 2952644 ~ 2952881 (+)
G166763 NA non-coding downstream 125935 2955653 ~ 2955895 (+)
G166766 NA non-coding downstream 127699 2957417 ~ 2957680 (+)
G166767 NA non-coding downstream 128086 2957804 ~ 2958119 (+)
CI01000032_01698448_01701006 NA other upstream 1126111 1698448 ~ 1701288 (+)
G165570 NA other upstream 1469832 1349578 ~ 1357567 (+)
G166734 NA other downstream 5596 2835314 ~ 2849684 (+)
G166765 NA other downstream 127070 2956788 ~ 2957213 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G140747 NA non-coding NC_053125.1 CM020922.1 2673523 ~ 2676919 (-)