CI01000032_02857743_02864895 (SYBL1, VAMP7)


Basic Information

Item Value
gene id CI01000032_02857743_02864895
gene name SYBL1, VAMP7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 2856913 ~ 2864975 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000032_02857743_02864895.mRNA
GTATATATCCACCGGGTAATACTCCCAGAGAGACACTGTTTGACCCAAAACACTACATTCTTAAACAGAATTTATTGTCTGCAGGCAGTAAGATTATTCATAATTGTTTGTTGTCTACCAGAAGACTCCCACATTTAGCCATGAGCCATATATGGTTTATGACTATGACACATGACCATGGGCATGGTGTATTTTTTGTTTAGTATGTGAGTTTCACAATGTCTGTAGAATGTCAAACAGTTTCAGTTGTATTTTTTTGAATTATGATTATTCATATTACCTTATTCACAGCATACCTTATTCACAGCAGCGCCATCTTTGATTTTTAACAGGAATGAAAGTGAGGCTGTGGGGGATAGACATACATCTCTTCAGTGGGTTGTGCTGTTACTTAATGTATTTTTGGATTGTTCTGCTAATGAAACACTGCAAAAATATGTTTCCAAGAAATGTCAGTAGATAAAAAAAACTCCACACAACATGAGCTGTGGAAAATTAGTGATCTTGGAGCTTTATACCGCTTTTACAAGTCTGTCCCTCACAGGCTCGCTTTCATACCTGTCATGGTACTGCCCTGAATAAGGTCTGTTATCGAGTCCTGCATAAATTCAGTGTTCCTTGTATTCTATGTCTTACATGAAGATTTAAACCAACCACTGCTGTACTCAAATATGTGATTGGCCAAGCAAAATTTGACATTTTCACATAAAGTTGACATTTAAGTGGATGTATAATAAGTATCTCCCAAAATAAAATTCTAAAAAAAATTCTTTGGTAGTCTTGTGGTGACAAACTCATCTTTTGTTGCCTCAAACCACCATGGATTCAGAATGGTGATTTTTTTCACCCCAAGGCCACAAGTTTGCAGCACTGATAATATTAAACCCACAAAAATCTTGGAATCTTGGAAATTTATTAAGACTGAGTGGGCACAGCACTTCTGGCAGGAAGTGACCAAAAATTCCCACAGTGTTCGATCAGGTTTATTTGCGGTGATGGCTATCCTGTTTGCCGTGGTGGCTCGAGGATCGACCGTTCTGGCTAAACATGCGTGTTTCTCTGGCAACTTTCTGGAGGTGACGGAACAGATCCTGGCTAAAATCCCATCAGAAAACAACAAACTCACATATTCCCATGGCAGCTATCTGTTCCACTACATCTGCCACGAGAGGATTGTCTATCTGTGTATCACTGATGATGTGAGTATCTGCCACGAGTTTGAGCGCTCCCGTGCATTCGGCTTCCTGAATGAGGTGAAAAAGAGATTTCAGACAACTTACGGCTCACGAGCACAGACTGCGCTGCCCTACGCCATGAACAGTGAGTTTTCCAGCACGTTGGCTGCACAAATGAAACATCACTCAGATCCCAAAGGCTCAGACAGACTGACAGAAACACAGATGCACGTAGACGACTTGAAAGGCATTATGGTCCGGAACATTGATCTCGTAGCTCAGAGAGGAGAGAGGCTCGAGCTGCTCATCGATAAAACCGAGAACTTGATGGATTCTTCTGTCACCTTTAAAACAACAAGTCGGAACCTGGCCCATGCAATGTGTATGAAGAACCTGAAGTTAACAGTCATTATCATAATAGCCGTGCTGGAGGACAGTTACCCTAAACACACTTCAAAAAGCACCCAAGAATGGTTGGTTTGTGGCACTGGGCAGTCGTCATTAAGACAGCTCACTTTGTTTTTCTATGGCACAGATATGATGATGTGGCTTTTAAAACAGGTGGGTACAGTTGAGCTTTTTAAGGAGGTGGAAAAAATATCTGTAAAAACAGCAGCCAGTTGCACACTGGCTTGAATAGATGCAGTTTATAATCCATTAGAGTTTAGATTCCCTGCCATATCTGATGCATGTCTTGAAGTGCAGTTAAACTGTTA

Function

symbol description
sybl1 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in endosome to lysosome transport; exocytosis; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Orthologous to human VAMP7 (vesicle associated membrane protein 7).
vamp7 Predicted to enable SNAP receptor activity and SNARE binding activity. Involved in several processes, including endosome to lysosome transport; leukocyte degranulation; and positive regulation of histamine secretion by mast cell. Located in several cellular components, including pseudopodium; secretory granule; and trans-Golgi network. Part of SNARE complex.

GO:

id name namespace
GO:0006887 exocytosis biological_process

KEGG:

id description
K08515 VAMP7; vesicle-associated membrane protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000032_02857743_02864895.mRNA True 1891 mRNA 0.41 9 2856913 2864975

Neighbor

gene id symbol gene type direction distance location
CI01000032_02827399_02829641 NA coding upstream 27195 2827399 ~ 2829718 (+)
CI01000032_02773889_02774396 NA coding upstream 82412 2773889 ~ 2774501 (+)
CI01000032_02768103_02768518 NA coding upstream 88395 2767994 ~ 2768518 (+)
CI01000032_02660718_02684072 ARHGEF9 coding upstream 172695 2660718 ~ 2684218 (+)
CI01000032_02631785_02635555 NA coding upstream 220928 2630508 ~ 2635985 (+)
CI01000032_03046961_03053202 RRAGA.L, RRAGB, RRAGA, MGC78980 coding downstream 181986 3046961 ~ 3053926 (+)
CI01000032_03083089_03083664 NA coding downstream 217008 3081983 ~ 3084146 (+)
CI01000032_03142737_03156736 NA coding downstream 276767 3141742 ~ 3158789 (+)
CI01000032_03168377_03169554 NA coding downstream 303306 3168281 ~ 3169747 (+)
CI01000032_03210864_03212974 TMEM129 coding downstream 345889 3210864 ~ 3214164 (+)
G165948 NA non-coding upstream 66834 2789852 ~ 2790079 (+)
G165847 NA non-coding upstream 120716 2732418 ~ 2736197 (+)
G165940 NA non-coding upstream 129923 2726764 ~ 2726990 (+)
G165906 NA non-coding upstream 314218 2542466 ~ 2542695 (+)
G166738 NA non-coding downstream 22871 2887846 ~ 2890042 (+)
G166760 NA non-coding downstream 87669 2952644 ~ 2952881 (+)
G166763 NA non-coding downstream 90678 2955653 ~ 2955895 (+)
G166766 NA non-coding downstream 92442 2957417 ~ 2957680 (+)
G166767 NA non-coding downstream 92829 2957804 ~ 2958119 (+)
G166734 NA other upstream 7229 2835314 ~ 2849684 (+)
CI01000032_01698448_01701006 NA other upstream 1155625 1698448 ~ 1701288 (+)
G165570 NA other upstream 1499346 1349578 ~ 1357567 (+)
G166765 NA other downstream 91813 2956788 ~ 2957213 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location