CI01000032_03046961_03053202 (RRAGA.L, RRAGB, RRAGA, MGC78980)


Basic Information

Item Value
gene id CI01000032_03046961_03053202
gene name RRAGA.L, RRAGB, RRAGA, MGC78980
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 3046961 ~ 3053926 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000032_03046961_03053202.mRNA
GTGCTGTTGATGGGTAAAAGTGGATCAGGAAAGACCAGTATGAGGTCAATTATATTTGCCAATTACATCGCCAGAGACACTCGCCGCCTTGGAGCCACAATTGATGTGGAGCACTCTCATGTGCGATTTCTGGGCAATCTGGTGCTGAACCTATGGGACTGCGGTGGACAGGACACTTTCATGGAAAACTACTTCACGAGTCAGAGAGATAACATCTTTCGCAATGTAGAGGTGCTGATCTACGTTTTTGATGTGGAGAGCCGAGAGCTGGAGAAAGATATGCATTACTACCAGTCGTGTCTGGAAGCTATCCTGCAGAACTCGCCTGACGCAAAGATCTTCTGCCTGGTACACAAGATGGACCTCGTCCAGGAGGATCAGAGAGATCTGATATTTAAAGAGCGTGAGGAGGACCTGAAAAGATTGTCTCGCCCACTGGCCTGCACCTGCTTTAGAACGTCCATTTGGGATGAGACGCTGTATAAAGCATGGTCCAGTATCGTCTATCAGCTCATTCCTAATGTACAGCAGCTTGAGTGCAATCTGCGCAACTTTGCTCAGATAATTGAGGCAGATGAAGTCTTGCTTTTTGAAAGAGCTACTTTCCTGGTGATCTCTCATTATCAGTGTAAGGAACAACGTGATGCTCATCGCTTCGAGAAGATCAGTAACATCATCAAGCAATTCAAGCTGAGCTGCAGCAAGTTGGCGGCCTCTTTCCAAAGCATGGAAGTGCGCAACTCTAACTTTGCTGCCTTTATTGACGTATTCACTTCCAACACTTACGTCATGGTGATCATGTCAGACCCGTCTATACCTTCAGCTGCTACCCTCATCAACATCCGGAATGCCAGGAGACATTTTGAGAAGCTTGAGCGTGTGGACGGGCCCAAACACAGTCTACACATGCGTATGCGCTAGACTGCCAGCGTGGAGAGTGTGAGTGTCTGGACCAGTCCTCACGTTTCACTGATTTGCCTTAATTGTTTCTTTAAATCAGTTTACATTTGTTTGGCACAACATGGCGAGAGGAAAAAAAGTCTTTTAAAACTTGGCAGTTTTAAGGCCTATAAAATCAAGGGTAAAAATTGTATATTGAATATTTAAATTGATCATGTAGTGACTTACTATAGAATTCTGTGCTTTTAAACTGTGATTAGAATGTTTGGAAACATTTGAATAACAACAGGATTAAAGATAACCAAAAAGTTTGGTGGCTGCTGTTTTACTGACATGTTCATACTTTTTCTTATGTACAGGGTGGTGAGTGAACTGCTGGGAATCATCAAGAAGAATTCCTCCTGTTTTGCTGACTTCACATGCATCTAGTGTTTTCTGCCAAGGAACTAATTCATCTGATATTAAAAGGCACTCACTAATCACTTTCCTCACTAATGTTGCAAAGGAACTTTAGTTCTTAATATATGATTTGTGCCATAAGGTGGCTTGCAAGTTACTGATAGCCAGGAAAACTAGATCATGAAGTCAGCATTCTTTGCCTGTCTTTTATATATTGTCTTATATTAAGCATTATCGGCTTGCTGTACTGTTTCCAAATGTCGAGCAGTAATCTGTGTGACTAAAATTGGTCTAACTTATAAATTAACAACTTGATCTACAAAATCATCTATTATAAATATTCTCA

Function

symbol description
rraga Predicted to enable GTPase activity. Acts upstream of or within central nervous system myelination; regulation of apoptotic cell clearance; and regulation of lysosome organization. Predicted to be located in cytoplasm. Predicted to be part of Gtr1-Gtr2 GTPase complex. Predicted to be active in lysosome and nucleus. Orthologous to human RRAGA (Ras related GTP binding A) and RRAGB (Ras related GTP binding B).
rragb Enables GTP binding activity; GTPase activity; and GTPase binding activity. Involved in several processes, including cellular response to amino acid stimulus; cellular response to leucine starvation; and positive regulation of TORC1 signaling. Located in lysosome.

GO:

id name namespace
GO:0034448 EGO complex cellular_component

KEGG:

id description
K16185 RRAGA_B; Ras-related GTP-binding protein A/B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000032_03046961_03053202.mRNA True 1645 mRNA 0.42 8 3046961 3053926

Neighbor

gene id symbol gene type direction distance location
CI01000032_02857743_02864895 SYBL1, VAMP7 coding upstream 181986 2856913 ~ 2864975 (+)
CI01000032_02827399_02829641 NA coding upstream 217243 2827399 ~ 2829718 (+)
CI01000032_02773889_02774396 NA coding upstream 272460 2773889 ~ 2774501 (+)
CI01000032_02768103_02768518 NA coding upstream 278443 2767994 ~ 2768518 (+)
CI01000032_02660718_02684072 ARHGEF9 coding upstream 362743 2660718 ~ 2684218 (+)
CI01000032_03083089_03083664 NA coding downstream 28057 3081983 ~ 3084146 (+)
CI01000032_03142737_03156736 NA coding downstream 87816 3141742 ~ 3158789 (+)
CI01000032_03168377_03169554 NA coding downstream 114355 3168281 ~ 3169747 (+)
CI01000032_03210864_03212974 TMEM129 coding downstream 156938 3210864 ~ 3214164 (+)
CI01000032_03323107_03325296 NA coding downstream 269181 3323107 ~ 3325637 (+)
G166836 NA non-coding upstream 10484 3036167 ~ 3036477 (+)
G166835 NA non-coding upstream 11461 3035237 ~ 3035500 (+)
G166775 NA non-coding upstream 82956 2963784 ~ 2964005 (+)
G166774 NA non-coding upstream 83358 2963290 ~ 2963603 (+)
G166773 NA non-coding upstream 84129 2962475 ~ 2962832 (+)
G166841 NA non-coding downstream 10315 3064241 ~ 3064683 (+)
G166842 NA non-coding downstream 10854 3064780 ~ 3064994 (+)
G166847 NA non-coding downstream 24715 3078641 ~ 3079096 (+)
G166853 NA non-coding downstream 38183 3092109 ~ 3092325 (+)
G166860 NA non-coding downstream 52821 3106747 ~ 3107151 (+)
G166765 NA other upstream 89748 2956788 ~ 2957213 (+)
G166734 NA other upstream 197277 2835314 ~ 2849684 (+)
CI01000032_01698448_01701006 NA other upstream 1345673 1698448 ~ 1701288 (+)
G165570 NA other upstream 1689394 1349578 ~ 1357567 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00021407 LOC105927798,LOC100704732,LOC103366304,LOC102229095,LOC107386560,LOC101162152,LOC101061287 coding CM030130.1 CM030130.1 16636355 ~ 16642487 (+)