Gene
RNA
| Item | Value |
|---|---|
| gene id | G166847 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000032 |
| NCBI id | null |
| chromosome length | 4185905 |
| location | 3078641 ~ 3079096 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU189541 | True | 456 | lncRNA | 0.37 | 1 | 3078641 | 3079096 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000032_03046961_03053202 | RRAGA.L, RRAGB, RRAGA, MGC78980 | coding | upstream | 24715 | 3046961 ~ 3053926 (+) |
| CI01000032_02857743_02864895 | SYBL1, VAMP7 | coding | upstream | 213666 | 2856913 ~ 2864975 (+) |
| CI01000032_02827399_02829641 | NA | coding | upstream | 248923 | 2827399 ~ 2829718 (+) |
| CI01000032_02773889_02774396 | NA | coding | upstream | 304140 | 2773889 ~ 2774501 (+) |
| CI01000032_02768103_02768518 | NA | coding | upstream | 310123 | 2767994 ~ 2768518 (+) |
| CI01000032_03083089_03083664 | NA | coding | downstream | 2887 | 3081983 ~ 3084146 (+) |
| CI01000032_03142737_03156736 | NA | coding | downstream | 62646 | 3141742 ~ 3158789 (+) |
| CI01000032_03168377_03169554 | NA | coding | downstream | 89185 | 3168281 ~ 3169747 (+) |
| CI01000032_03210864_03212974 | TMEM129 | coding | downstream | 131768 | 3210864 ~ 3214164 (+) |
| CI01000032_03323107_03325296 | NA | coding | downstream | 244011 | 3323107 ~ 3325637 (+) |
| G166842 | NA | non-coding | upstream | 13647 | 3064780 ~ 3064994 (+) |
| G166841 | NA | non-coding | upstream | 13958 | 3064241 ~ 3064683 (+) |
| G166836 | NA | non-coding | upstream | 42164 | 3036167 ~ 3036477 (+) |
| G166835 | NA | non-coding | upstream | 43141 | 3035237 ~ 3035500 (+) |
| G166775 | NA | non-coding | upstream | 114636 | 2963784 ~ 2964005 (+) |
| G166853 | NA | non-coding | downstream | 13013 | 3092109 ~ 3092325 (+) |
| G166860 | NA | non-coding | downstream | 27651 | 3106747 ~ 3107151 (+) |
| G166861 | NA | non-coding | downstream | 31046 | 3110142 ~ 3110345 (+) |
| G166862 | NA | non-coding | downstream | 31810 | 3110906 ~ 3527585 (+) |
| G166857 | NA | non-coding | downstream | 114938 | 3194034 ~ 3196104 (+) |
| G166765 | NA | other | upstream | 121428 | 2956788 ~ 2957213 (+) |
| G166734 | NA | other | upstream | 228957 | 2835314 ~ 2849684 (+) |
| CI01000032_01698448_01701006 | NA | other | upstream | 1377353 | 1698448 ~ 1701288 (+) |
| G165570 | NA | other | upstream | 1721074 | 1349578 ~ 1357567 (+) |
