G166738


Basic Information

Item Value
gene id G166738
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 2887846 ~ 2890042 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU189429
GGCGGAGTTAGCGACAAACAAACAAACAATGGCGGAAGAAGAGAACACGAGGAATATTAGTATTGGGAGATGCTCCGCTTTACTTCATTTACAGCGATGCAAGATGTGCTGCAACAGTTTCCACTGCCCAGTGTTCTTAAACCGACCAGACAGCACAAGTTGAATGCACACCTTCAAATTCACTTCAAAAAGGCTGTTGTCCATGGAGTAAATTGACAAGCAGAATCATCCCAGGACAGTGGAAGCTGATCAAAAACAAGGAGCCACGGATCACAGAAGACCTCTGCGCTGCACTTGAATGGCTGCACAACAACCAAAAGTCTTCAAGCGTTTAGTGGAAGAGCTGTGCTTTCTGATATTGAAAAGGAAGACCAGGGAAAAGCCCTTCTTCAACTTTCACAGGCTGAAACGGATGATGACAGACAACTGGCCAAAGAGCCTTTAGCGTTTTGCTTACAAATTAAGAATGATATGGACATTTTTCTTAATGAGTGTCTGGACAAAAAGAGTCTTGTAATTAATTGCATGTTTATGGAGATTTTTTTTTTTTTTTTTTTTTTTAAAGATTTAGTTTGTCATCATGTACCTGCTGTTCAATTTACACTCTTTGGTTTGATTTTGTAATTTTTTAGAGCAAAGCACAGCTAGTAGCTATATAATGCTTTTGCTACTTAGGGGGAAAAGTACATTTTATTAAAATTAAATAAATAACTGTTGTGTTTTGTTTTTGGGTTTGATGGATCTGAATTTGCTTAATTCATGCAATCTAGTGTACAACTGTGTAATGTGTATTATATTAATGTGTATTATATATTATGAAAAACAATGGTTCATTCTGAAATGCTTGAGTAAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU189429 True 855 lncRNA 0.37 4 2887846 2890042

Neighbor

gene id symbol gene type direction distance location
CI01000032_02857743_02864895 SYBL1, VAMP7 coding upstream 22871 2856913 ~ 2864975 (+)
CI01000032_02827399_02829641 NA coding upstream 58128 2827399 ~ 2829718 (+)
CI01000032_02773889_02774396 NA coding upstream 113345 2773889 ~ 2774501 (+)
CI01000032_02768103_02768518 NA coding upstream 119328 2767994 ~ 2768518 (+)
CI01000032_02660718_02684072 ARHGEF9 coding upstream 203628 2660718 ~ 2684218 (+)
CI01000032_03046961_03053202 RRAGA.L, RRAGB, RRAGA, MGC78980 coding downstream 156919 3046961 ~ 3053926 (+)
CI01000032_03083089_03083664 NA coding downstream 191941 3081983 ~ 3084146 (+)
CI01000032_03142737_03156736 NA coding downstream 251700 3141742 ~ 3158789 (+)
CI01000032_03168377_03169554 NA coding downstream 278239 3168281 ~ 3169747 (+)
CI01000032_03210864_03212974 TMEM129 coding downstream 320822 3210864 ~ 3214164 (+)
G165948 NA non-coding upstream 97767 2789852 ~ 2790079 (+)
G165847 NA non-coding upstream 151649 2732418 ~ 2736197 (+)
G165940 NA non-coding upstream 160856 2726764 ~ 2726990 (+)
G165906 NA non-coding upstream 345151 2542466 ~ 2542695 (+)
G166760 NA non-coding downstream 62602 2952644 ~ 2952881 (+)
G166763 NA non-coding downstream 65611 2955653 ~ 2955895 (+)
G166766 NA non-coding downstream 67375 2957417 ~ 2957680 (+)
G166767 NA non-coding downstream 67762 2957804 ~ 2958119 (+)
G166770 NA non-coding downstream 70316 2960358 ~ 2960695 (+)
G166734 NA other upstream 38162 2835314 ~ 2849684 (+)
CI01000032_01698448_01701006 NA other upstream 1186558 1698448 ~ 1701288 (+)
G165570 NA other upstream 1530279 1349578 ~ 1357567 (+)
G166765 NA other downstream 66746 2956788 ~ 2957213 (+)

Expression


Co-expression Network