G165508


Basic Information

Item Value
gene id G165508
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 1108413 ~ 1112892 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU188011
TGGCTCTGTCACTGTGCCATCGAGTCACAGTCTCTAGCATGCAGCACAGAAAACGACCGTAGCGGCGGGACTCGTTCTCCGTGCAGCTCGCTACCGTGTAGATGATGTCAGAAAAAAACTCTGTCGTAGCAAAGTAGGGTGCAGAAGTTGGGCGTCTTCTGCTGGTGTACCAGCTCCACGAAGCGAGCACAGTAAACTGCGTCAATGGCTGAGAAGACGCAGCGGGGGAAGATGCAGAGCTGCAGGAACTTAGTGATGGTTTCATTCTTA
>TU188012
TGGCTCTGTCACTGTGCCATCGAGTCACAGTCTCTAGCATGCAGCACAGAAAACGACCGTAGCGGCGGGACTCGTTCTCCGTGCAGCTCGCTACCGTGTAGATGATGTCAGAAAAAACTCTGTCGTAGCAAAGTAGGGTGCAGAAGTTGGGCGTCTTCTGCTGGTGTACCAGCTCCACGAAGCGAGCACAGTAAACTGCGTCAATGGCTGAGAAGACGCAGCGGGGGAAGATGCAGAGCTGCAGGAACTTAGTGATGGTTTCATTCTTAGTGGATTTGGCGAGTAACCAGTTGTCTTTCTCCAGTTTGAGGCGATGCAGAACTCTCTGCACATGCTCTAGCTGTTTCTTCTCCTCTTCTTGCAGCTTGTCCTGCAGCGCTGTGCAGCGTTCCTTCTCTTTCTTCTTTTTATTCAGGGGCATCTCTGTATTTTCATCAATGGCCTTGATCTGCATCTTAAGCTTGTTGACCTCCCGGTCGTAGGCATTGTGTGGTACCGCCAGGTCGTACATGGTGAGGGACCAGAAGGTGGCATAGAACTGGGGTCGAAGATCATCCCACACTTTGGGCAAGTGAAGAGAGACGACAGCCTCATGCACAGGGGTCATAATCTGCTCACAGGCTGCAATGTACTTATGGACCTTCTGCTGCTGCCGGTTGCCCTTCTCTGCCTTCTTCAATTCGTCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU188011 False 270 lncRNA 0.53 2 1108413 1109886
TU188012 True 687 lncRNA 0.52 4 1108413 1112892

Neighbor

gene id symbol gene type direction distance location
CI01000032_01000707_01061531 GRIA3B, GRIA3 coding upstream 46580 999178 ~ 1061833 (+)
CI01000032_00932336_00974922 GRIA3B, GRIA3 coding upstream 133491 932336 ~ 974922 (+)
CI01000032_00861012_00868904 FYN.L, FYNA, FYNB, FYN, FYN.S coding upstream 239509 860929 ~ 868904 (+)
CI01000032_00846052_00850360 COL10A1A coding upstream 257556 846052 ~ 850857 (+)
CI01000032_00811247_00821148 NA coding upstream 287179 811247 ~ 821234 (+)
CI01000032_01179180_01182878 MAGT1 coding downstream 65359 1178251 ~ 1184021 (+)
CI01000032_01218926_01234833 PLS3 coding downstream 106034 1218926 ~ 1234929 (+)
CI01000032_01238397_01244212 NA coding downstream 125074 1237966 ~ 1244361 (+)
CI01000032_01251696_01259949 CNGA2, CNGA5 coding downstream 138455 1251347 ~ 1260248 (+)
CI01000032_01279596_01288916 NUP62L coding downstream 166329 1279221 ~ 1288995 (+)
G165505 NA non-coding upstream 5887 1099618 ~ 1102526 (+)
G165506 NA non-coding upstream 21160 1085924 ~ 1087253 (+)
G165512 NA non-coding upstream 234924 873220 ~ 873489 (+)
G165316 NA non-coding upstream 373275 733588 ~ 735138 (+)
G165564 NA non-coding downstream 88938 1201830 ~ 1202070 (+)
G165580 NA non-coding downstream 147859 1260751 ~ 1261136 (+)
G165587 NA non-coding downstream 149496 1262388 ~ 1262623 (+)
G165608 NA non-coding downstream 245051 1357943 ~ 1358579 (+)
G165610 NA non-coding downstream 246496 1359388 ~ 1359666 (+)
G165570 NA other downstream 236686 1349578 ~ 1357567 (+)
CI01000032_01698448_01701006 NA other downstream 585596 1698448 ~ 1701288 (+)
CI01000032_02773889_02774396 NA other downstream 1645840 2773889 ~ 2774501 (+)
G166734 NA other downstream 1722422 2835314 ~ 2849684 (+)
G166765 NA other downstream 1843896 2956788 ~ 2957213 (+)

Expression


Co-expression Network