CI01000032_01179180_01182878 (MAGT1)


Basic Information

Item Value
gene id CI01000032_01179180_01182878
gene name MAGT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 1178251 ~ 1184021 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000032_01179180_01182878.mRNA
GTATAAAAGCCAACAATAACAATATTATAAATAAACATTTTGAGAAATGAAGAGAGAATAAATGTTTTAGAGACATCCTTGAGCACGTAGCTTCTACTTTCTTCTTTCATCTGAACGGCCTTGTTGCTTATTATAATTTTGTCTTTTGATTGTACAGACAGTTGTATATGCAAGCTTTAACTGTATGTGAATTATTAATCATGATCAATAAAAAATTAGAAACATGTTGGTGTATCTTACTGGGCATCTTAGGAGGAAATAGCTTAAAAGACTACATTTTTGCACAATTTGCTACCAACAGAAAGTACAAAATTGATAATTAACTTAGAGAGAAAAAAAATGTCTATACATGTATACAATATATACGTGTTTGCAAAAATATATAAAATAATAAAAATATATACACCGTAAGAAGTCCACATTCTTCATATAGGCCTACATAATAATTTGTCTGGGGCTAAAATAACTTTATAAGGTATAGATATAGGACTATATAAAATAACTTTATACTGTATAGATATATATGAACAGTGGGAAACACGACACAAGCATTTCAATTTTTTCCCGTCTTTTTTTTATATTAACATGTGCCTCATTTCTTAATTATTATTTAATTTTTATGTTGTATATCAGGACTGCGGGTTCTTTATCAGCAATCATGCCAGTATATTCATTTTGTTGACTTTGGCTTTATAATCTTACTTTTACTACATGAAACCATCTAGTTTGTTGTTTTTTTGTTTTAAATGAAAGTCACCAACAGCCTTAGGCTTTTATTTTGAAAATACTAAAGTATTTTTAAGCTTTAGTTTTGTCGCTTGAGACTTTTATTTTAAAACTCTTCCTCTTCCGCTGAGCTCCACCAATAGGAAGCGGACAGGAGTTTCTTCCTGCAGAACTGTCGTGGCCGCAGAGTGGCAGCTTTAGAAATGTTTTATAAACTTTTGATAGTTGTTTTCCTCGCTGTTAGTTTACATGGCACGCCATCAAATGGGCAGAAAAAGAAGGAGACCCTGCTATCAGAAAAGGTCAGTCAGATGATGGAGTGGGCCAGTAAGCGTGCAGTAATCCGGCTGAACGGAGAGAAGTTCAGGAGGCTGATCCGAGCTCCTCCACGCAACTACTCCGTCATTATCATGTTCACAGCTCTGCAGCCACAGAGACAGTGTGCTGTCTGCAAACAGGCAGATGAAGAGTACCAGATCCTTGCAAACTCTTGGCGTTATTCGAGTGCATTTACTAACCGGATTTTCTTTGCAATGGTGGATTTTGATGAAGGCTCAGATGTTTTCCAGATGCTCAACATGAACTCGGCTCCGACATTCATCAACTTCCCGGCCAAAGGCAAACCCAAGCGAGCGGATACGTACGAGCTACAGGTCCGAGGCTTTGCAGCCGAGCAGCTGGCCCGATGGGTGGCGGACCGAACAGATGTCCATATCCGGGTAATCAGGCCTCCAAACTACGCCGGGCCACTGATGCTGGGTTTGCTGCTGGCGTTCATCGGCAGTCTGGCTTACTTGCGCCGAAACAACCTGGAGTTCCTGTTCAATAAGAATGTCTGGGCTTTCTCTGCACTGGTGGGCACTTGACATTTTTATTTTATATTGCAAAGATGGGATCTAATACTTCTATTCCTCTATAGTTTTTATTATATGTTGATTTTTATTATATGCTGATACCCTTGAAAAGGTTTTAATTAGAGATGCACGATATATCGCCCACCATATTGGTATTGGCCGATATATATGTTATCCTTATCGACCCAATAATAAAATTTGGCCGATATATTAAAGCTGATAAATAATGGATTATTTCCTTCAGCTGAGACACTTCAGATTCACTTTGTTCACCATGATGGTTTTGAATTGCTTGAAATATGATTGAAATCACTTTGAAGAGGAAAATACAGTTAAGTGCAACATGCAGCGCAAGTCTGTCATATAGACTACATAAAATTATAAAGAAAATACTACTGCAAAAAGAATGTTGTGAATCCTTTGTGCGCTGTTATTTTTTCTCGTACCATTTTCATCAACAATATGGTTTAATTAAAATCATTTCATTACTGTCCATGCATAGGCTATTCCATTTTGTTTGTCTATGCACATGTATTTTGATTCTTTATAAGTAATGTTGTCCAGTGACTTGTTTGCATTATTTAGGGATTATTTTATTTAATTGTAAGGCAATAGATTTTTTTTATTATTTATTTATTTATTTATGATAAAGAAAGTTAGCCATAGGAGTGTAAAATTAATTTTAAAAACGTACACTGGTTCAAACTAGGCTACTGTACTGTATATGTTTGATTTATGTTGTGCTTGGGACATGGCTTTTAAAGTTGAACTTTTTTTTTTTGTTTGTTTTTTTAAATCAGGCTCTCAAAAATTATATAAAAATTTGGATATAGATTTTGATTTAAAGGCCAAAATATCAGTTATCGGCTTTCAAATATAAAGCATTATATCGTTATCGGCTAAAATTTTCATATCGGTGCATCCCTACTTTTAAAAGTAAAATTTAGTTTTAGATCTAATTTAGTTGTTCAACAAAATACGAAAGAAATGTTTTTAAGTCTGCCAGTCTGTGCCAGAAAATTTTAATTAAATTAAATTAAATTAAAATAGGGACCCAAGTCATGTCTAGGGTCTTGGTAGGTGGCATCTTCATTATTCCTTACAACTTTTTTTTTTTTCTTCTTTTTTTCTTTTTTTTTTGTATTAAGACTTGAA

Function

symbol description
magt1 Predicted to enable magnesium ion transmembrane transporter activity. Acts upstream of or within magnesium ion transport. Predicted to be located in endoplasmic reticulum and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of oligosaccharyltransferase complex. Human ortholog(s) of this gene implicated in X-linked immunodeficiency with magnesium defect, Epstein-Barr virus infection, and neoplasia; congenital disorder of glycosylation Icc; and non-syndromic X-linked intellectual disability. Orthologous to human MAGT1 (magnesium transporter 1).

GO: NA

KEGG:

id description
K19478 MAGT1; magnesium transporter 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000032_01179180_01182878.mRNA True 2735 mRNA 0.34 5 1178251 1184021

Neighbor

gene id symbol gene type direction distance location
CI01000032_01000707_01061531 GRIA3B, GRIA3 coding upstream 116418 999178 ~ 1061833 (+)
CI01000032_00932336_00974922 GRIA3B, GRIA3 coding upstream 203329 932336 ~ 974922 (+)
CI01000032_00861012_00868904 FYN.L, FYNA, FYNB, FYN, FYN.S coding upstream 309347 860929 ~ 868904 (+)
CI01000032_00846052_00850360 COL10A1A coding upstream 327394 846052 ~ 850857 (+)
CI01000032_00811247_00821148 NA coding upstream 357017 811247 ~ 821234 (+)
CI01000032_01218926_01234833 PLS3 coding downstream 34905 1218926 ~ 1234929 (+)
CI01000032_01238397_01244212 NA coding downstream 53945 1237966 ~ 1244361 (+)
CI01000032_01251696_01259949 CNGA2, CNGA5 coding downstream 67326 1251347 ~ 1260248 (+)
CI01000032_01279596_01288916 NUP62L coding downstream 95200 1279221 ~ 1288995 (+)
CI01000032_01290025_01292308 NA coding downstream 105313 1289334 ~ 1292308 (+)
G165508 NA non-coding upstream 65359 1108413 ~ 1112892 (+)
G165505 NA non-coding upstream 75725 1099618 ~ 1102526 (+)
G165506 NA non-coding upstream 90998 1085924 ~ 1087253 (+)
G165512 NA non-coding upstream 304762 873220 ~ 873489 (+)
G165564 NA non-coding downstream 17809 1201830 ~ 1202070 (+)
G165580 NA non-coding downstream 76730 1260751 ~ 1261136 (+)
G165587 NA non-coding downstream 78367 1262388 ~ 1262623 (+)
G165608 NA non-coding downstream 173922 1357943 ~ 1358579 (+)
G165610 NA non-coding downstream 175367 1359388 ~ 1359666 (+)
G165570 NA other downstream 165557 1349578 ~ 1357567 (+)
CI01000032_01698448_01701006 NA other downstream 514467 1698448 ~ 1701288 (+)
CI01000032_02773889_02774396 NA other downstream 1574711 2773889 ~ 2774501 (+)
G166734 NA other downstream 1651293 2835314 ~ 2849684 (+)
G166765 NA other downstream 1772767 2956788 ~ 2957213 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location