G165580


Basic Information

Item Value
gene id G165580
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 1260751 ~ 1261136 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU188096
TGATATTTAAATAAAAAGTATGTTAAAATGTTTTAAATTTTATTGATTACTTGCAGGCTGTTACAAATATTCAGTTGTGTTTGTTCTTAGTTTCGTTTTAATGGACTTTTAGTTTGTATATATTAGTTTCCTGTGCTCCTTTGTTCTTTTCCCCCTTCTCTCGTGTTGTCATGGTTACTAATGTCATTAGTTTGTTTAGTTCAGCTGTGTTACATTGATTACCCTGTTGGTCAGTATACTTAAGTTTGTCAACTTGCTTATGTATACTTAAGCCTTTTCCTGTGTTTAGTGTCCGGTCTTGTTTGCATTAGTGTCTGTTTAAGTTGCGTTAATTCTGAGGCTGTTGTGGATTACTTTGTGGACTTTTATTAAAATCTGTGTTTTGA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188096 True 386 lncRNA 0.32 1 1260751 1261136

Neighbor

gene id symbol gene type direction distance location
CI01000032_01251696_01259949 CNGA2, CNGA5 coding upstream 503 1251347 ~ 1260248 (+)
CI01000032_01238397_01244212 NA coding upstream 16390 1237966 ~ 1244361 (+)
CI01000032_01218926_01234833 PLS3 coding upstream 25822 1218926 ~ 1234929 (+)
CI01000032_01179180_01182878 MAGT1 coding upstream 76730 1178251 ~ 1184021 (+)
CI01000032_01000707_01061531 GRIA3B, GRIA3 coding upstream 198918 999178 ~ 1061833 (+)
CI01000032_01279596_01288916 NUP62L coding downstream 18085 1279221 ~ 1288995 (+)
CI01000032_01290025_01292308 NA coding downstream 28198 1289334 ~ 1292308 (+)
CI01000032_01293850_01336978 ATRX coding downstream 32714 1293850 ~ 1337168 (+)
CI01000032_01441770_01450965 ZDHHC15, ZDHHC15B coding downstream 179873 1441009 ~ 1451723 (+)
CI01000032_01469232_01488085 NA coding downstream 207755 1468891 ~ 1488425 (+)
G165564 NA non-coding upstream 58681 1201830 ~ 1202070 (+)
G165508 NA non-coding upstream 147859 1108413 ~ 1112892 (+)
G165505 NA non-coding upstream 158225 1099618 ~ 1102526 (+)
G165506 NA non-coding upstream 173498 1085924 ~ 1087253 (+)
G165587 NA non-coding downstream 1252 1262388 ~ 1262623 (+)
G165608 NA non-coding downstream 96807 1357943 ~ 1358579 (+)
G165610 NA non-coding downstream 98252 1359388 ~ 1359666 (+)
G165611 NA non-coding downstream 100917 1362053 ~ 1362315 (+)
G165619 NA non-coding downstream 121736 1382872 ~ 1383122 (+)
G165570 NA other downstream 88442 1349578 ~ 1357567 (+)
CI01000032_01698448_01701006 NA other downstream 437352 1698448 ~ 1701288 (+)
CI01000032_02773889_02774396 NA other downstream 1497596 2773889 ~ 2774501 (+)
G166734 NA other downstream 1574178 2835314 ~ 2849684 (+)
G166765 NA other downstream 1695652 2956788 ~ 2957213 (+)

Expression


Co-expression Network