CI01000032_01279596_01288916 (NUP62L)


Basic Information

Item Value
gene id CI01000032_01279596_01288916
gene name NUP62L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 1279221 ~ 1288995 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000032_01279596_01288916.mRNA
GCATAAAAAAATTCTTCTGACTGGAAACTTTTTCAGGCTATGCCATATTCCATTAGCAGTCATTTTATTTAAATACTCAAGACTAATAGACATTTAGTAATAACACAATATTAAAATAATAATAATATTCGTATCTTGAAATTAAGGAGCATTTTTGTTTATTTTGGTGGCATTTTTGCCCCAAGACCCGATCTGCACTGATCTCATACATATCTTCTCTGCAATTAAATTGATGGAAATTCATTGTAGCAACAGAGCATATAATCATTACAGGTCAACTGTTGGAAAAGCAAGGACCATTAAATTGTCTAACACTGTTATTTCACACATTTTTTTTACCCTTCTGCCCTCATTTACAAGGTCTTTTGTAGCACTATGGCATTTAACTTTGGACAAACGGGCACTGGGGGCTTCACCTTTGGACCCCCCAAAACTACGGCTGCGGCCACCACAGGCTTCGGGCTGCAGACCAGCACTCCTGCAGGAGGGGGCTTTTCTTTTGGAACCAGCCAACCCCAGAATCAAACCTTTGGAAACCCCCCACAGTCTCAGATTGCAGGACTGCTCGCACAGCCAACACAGAATAATGGAAGCACACAAGGTGGATTCAGCTTCGGAGCCCAGACTCAGAGCAGCACCTCAAGTGGAGGCTTCTCTTTTGGCGCCTCCCTTCCAAAACTCAGCACACCTGCAGCATCTCAACCTGCGACCACAGGTGTGACTCTGGGGGCTTCAACTGCGGGGACAGGCTTCACTCTCGGAGGTCTGGCCACTCAGACTACAGCGGCCCAGCAGCCTATGGGAGGGTTCAGCTTTGGGGCACCCAAAGTGCAGGCAGCCTCAGTTGCCCCAGCACAGCCCACCCCTGCGCTCTCACTGGGGGCTCAACCCACAGCCACCCCAGCCCCCACCAGCTCTGCTGTATCAAGTCAGTCCATGACGGCTCCAGTATCCTCTCTGTTTGCGAATCCTATAGCCTCAACACCAGCCACAGGATTCACATTGGGCTCTTCGATGGCCTCCGTGGCCCCTGTGATGACCTCAGCATCCATCGCTCCCACAAGCCTGTCCCTGAAGCCTCTGGGAGCTGCTCCTGCTGTAACGTCAGCTGCTGCTAGCACTGGAGTTACTACTGGCTTTACTCTGGGGCTGAAGACTGCAGCATCTACTGCACCAGCCACCATCACCGCCACCTCGACTTCAATCGTCACAACCAGCACTGCTCCAGTGATGTCATATGCTCAGCTGGAGGCTTTGATTAACAAGTGGAGCTCAGAATTGGAAGACCAAGAACGACACTTTCTTCAGCAGGCCACTCAGGTCAATGCCTGGGACCGTATGCTGGTGGAGAACGGAGAAAAGATAACTGCTTTACATAAAGATATGGAGAAAGTGAAACTGGACCAGCGAAGGCTGGATCAAGAGCTAGACTTCATCCTGTCACAGCAAAAAGAGCTGGAGGATCTTCTCGGTCCGTTAGAGGAGTCTGTGAAAGAGCAAAGCGGAACCATTTACATGCAGAATGCAGATGAAGAACGAGAAAGAACGTACAAGTTGGCAGAAAATGTGGATGCCCAACTCAAGAGAATGTCCCAAGATCTGAAAGAGATTATTGAACACCTCAACACATCCAGTGGACCTGGTGACACCACTGACCCAGTATGCAAAACATGCTCCATATTTGATACAGAAATGCTCTTTATGAGTTGTGTTTTACTCCAGAGGAGAGTGGAGGAGGTCTCAAAGTTGTGTGAAAACCGCAGCAAGGAACAAGAGAAGAGCTTTCGTTTAAACTTCCAGTGATCAAGCATAAAAAAAAAAAAAACAACAACTTTTCAATCAGATGTAAATGAATGTCATTGTTTTTGTTATTTACTTAAAA

Function

symbol description
nup62l Predicted to enable phospholipid binding activity. Predicted to be a structural constituent of nuclear pore. Acts upstream of or within several processes, including digestive system development; protein import into nucleus; and regulation of signal transduction. Predicted to be part of nuclear pore central transport channel. Is expressed in several structures, including brain; head; intestine; pectoral fin; and pectoral fin bud. Human ortholog(s) of this gene implicated in primary biliary cholangitis and striatonigral degeneration. Orthologous to human NUP62 (nucleoporin 62).

GO:

id name namespace
GO:0007507 heart development biological_process

KEGG:

id description
K14306 NUP62, NSP1; nuclear pore complex protein Nup62

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000032_01279596_01288916.mRNA True 1882 mRNA 0.47 10 1279221 1288995

Neighbor

gene id symbol gene type direction distance location
CI01000032_01251696_01259949 CNGA2, CNGA5 coding upstream 18973 1251347 ~ 1260248 (+)
CI01000032_01238397_01244212 NA coding upstream 34860 1237966 ~ 1244361 (+)
CI01000032_01218926_01234833 PLS3 coding upstream 44292 1218926 ~ 1234929 (+)
CI01000032_01179180_01182878 MAGT1 coding upstream 95200 1178251 ~ 1184021 (+)
CI01000032_01000707_01061531 GRIA3B, GRIA3 coding upstream 217388 999178 ~ 1061833 (+)
CI01000032_01290025_01292308 NA coding downstream 339 1289334 ~ 1292308 (+)
CI01000032_01293850_01336978 ATRX coding downstream 4855 1293850 ~ 1337168 (+)
CI01000032_01441770_01450965 ZDHHC15, ZDHHC15B coding downstream 152014 1441009 ~ 1451723 (+)
CI01000032_01469232_01488085 NA coding downstream 179896 1468891 ~ 1488425 (+)
CI01000032_01540330_01542854 NA coding downstream 244407 1533402 ~ 1542889 (+)
G165587 NA non-coding upstream 16598 1262388 ~ 1262623 (+)
G165580 NA non-coding upstream 18085 1260751 ~ 1261136 (+)
G165564 NA non-coding upstream 77151 1201830 ~ 1202070 (+)
G165508 NA non-coding upstream 166329 1108413 ~ 1112892 (+)
G165505 NA non-coding upstream 176695 1099618 ~ 1102526 (+)
G165608 NA non-coding downstream 68948 1357943 ~ 1358579 (+)
G165610 NA non-coding downstream 70393 1359388 ~ 1359666 (+)
G165611 NA non-coding downstream 73058 1362053 ~ 1362315 (+)
G165619 NA non-coding downstream 93877 1382872 ~ 1383122 (+)
G165626 NA non-coding downstream 106691 1395686 ~ 1395944 (+)
G165570 NA other downstream 60583 1349578 ~ 1357567 (+)
CI01000032_01698448_01701006 NA other downstream 409493 1698448 ~ 1701288 (+)
CI01000032_02773889_02774396 NA other downstream 1469737 2773889 ~ 2774501 (+)
G166734 NA other downstream 1546319 2835314 ~ 2849684 (+)
G166765 NA other downstream 1667793 2956788 ~ 2957213 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location