CI01000032_00731152_00733159 (GJA10, CX52.7)


Basic Information

Item Value
gene id CI01000032_00731152_00733159
gene name GJA10, CX52.7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 730818 ~ 733454 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000032_00731152_00733159.mRNA
GTTTATATACCAAGGAAACTAGACAGCAAATCCCACTGAAATGTAAGTGCGTTTTAGTTTGGTTTTGCGGATAATGCTTTGATTAGCTTAGTTAGTTTGTTTGTGTCTACGAACTATCATTTTGTGCAAAATTAAATACGAGCAGTTTGTTGTTGCATGTGCATGTCTGATAGTCTTGCAATTTATGTCAAACATCCTTTTTTTTGTTTGTCGAATACCTAATGCACGTCGGCTGATGCATAAATGCCAAAAAATAAAGAATAGTCCAACTTGAGAAGTAGGCTAAACTCATATTTTTTTGTCTTAAACTAAGCACTGACATGTGGCGGTGAAGATGGGGGACTGGAACTTGTTGGGGAGCATTTTAGAGGAGGTTCACATTCACTCCACCATCGTGGGTAAAATCTGGCTGACCATCCTGTTCATATTCCGGATGTTGGTTCTCGGCGTGGCGGCCGAGGACGTTTGGGTGGACGAGCAAAGCGAGTTCATCTGCAACACGGACCAGCCGGGATGCAAGAACGTCTGCTACGACCAGGCGTTCCCAATATCGCTCATTCGCTTCTGGGTACTGCAGATCATTTTTGTTTCCTCGCCTTCGTTGGTCTACATGGGACATGCTCTGTACCGGCTGAGGGCTTTGGAGAAAGAACGGCACAGGAGGAAAATCCAGCTGAGAGCCGAGCTGGAAGAGACGGAGCCCCTCTTGGAGGAGCACAAGAAATTGGAGAAGGAACTGAGGAAGCTGGAAGAGCAGAAGAAAATGAAGAAGGCTCCTCTGAGAGGCTCCTTGCTGCGCACATATATTATTCATATCCTTACCAGATCAGTGGTGGAAGTGGCGTTCATTGTGGGGCAGTATATCTTATATGGCATAGGACTGGATCCTTTGTACAAGTGCGAGAGGGTGCCTTGCCCGAACAGCGTGGACTGTTACGTCTCCAGGCCGACGGAGAAGACCATCTTCATGGTTTTCATGATTGTCATTGCAGGGGTTTCGTTGTTCCTCAACCTCATGGAAATATCCCACCTGGGGGTGAGAAAAATTAAACAGACACTAAGCGGACTCAAGTTTGTCGAGGACGACAGTCTTTGCAAACCCAGGCATTCGACCATTCAGCAACTGTGTGTGATGTCGGACTTGTCGCCTCACAAAAACCCGCAGTTGAAAACTTTTATCCCGCCGGGGCAAACGGACCCACCGCTGTTCTTTACCAGCGCTTGCGTCGGCTCGAGCAACGACATGCTGCGGCACAACAGTTTCGCCGCGGCCACCCTCCCGGTGTCCTGCATAACCCAGCAGCCCCGCCAAATGCGCCAGCCTAGCCAGGGAATGATCCATGAACTGCACTCCCAGGCATCCATGGAGCTGCTAGAGGACCGGGAAAACCGAGACCAGCATCTTGAGAGCAGTAACGGCTCAGAAAGGGACGTTAGACCTTTTAACTCGGGTCATCTGGGTTCTGAGAGTCATACCGAAATACCAGCCTGCCTTCGCAACGCTCTGCACAGGCCCAGCCACTTGCCGGACCTGGGAAACGATACTTTGGAGTCCTCCGAGAGCGACTTTTGTCAACCAAACAGAAAAGCCAGTTTCATGGTCCGTATGCCCTCAGACAGCATGTCTGGCAGTCCGTCCTGTCCCTCCACTAGGAGTTCAGAGTCCGAGCTGGGCTCCCTCAACGACCTGCCCATGAACCCACCACCAGGGGGGGGACGACGGATGTCCATGGCAAAGTGTATTCTTGGATATCTCTTCCATCATGAAAAAGTGAAAGTGAGAAGGACAGAAGGACAACAGGAATGTAACAGGCCGTTCATGAGCAGAAATGAATGGAGATATCAACAACAAATGGTTTAACTCTGATCTGCTCTGCTGGGGAAGCACTGGTTTAATGCAGCTTTATTGTGATATAAATAGTGCTTTTTTTTGTACCGTTCGTTTTTTAATTGCAAGCACCTTAATTTACCAGTAAAGCATGGTGTATAGCTTTTCCATGTCTAATTATGGAAGCCAAAATACATCTATGCATATTTATAAAAGCTTCAGACCTTCAGACAGCTGGCAAAAAAAGAGAGAACATTTTAAATCATTTAGCTTACATCCATAAAATGTGATGCAAGCTGATGGATCCTTACATCAAATTACAAAGAAA

Function

symbol description
gja10 Predicted to enable gap junction channel activity. Predicted to be involved in cell-cell signaling. Predicted to act upstream of or within detection of light stimulus involved in visual perception; gamete generation; and synapse assembly. Predicted to be located in gap junction. Predicted to be part of connexin complex.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07631 GJA10; gap junction alpha-10 protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000032_00731152_00733159.mRNA True 2156 mRNA 0.47 2 730818 733454

Neighbor

gene id symbol gene type direction distance location
CI01000032_00716503_00725057 NA coding upstream 5382 716503 ~ 725436 (+)
CI01000032_00541441_00550673 MAP7A coding upstream 180069 541441 ~ 550749 (+)
CI01000032_00503123_00508468 PNOCA coding upstream 222331 503123 ~ 508487 (+)
CI01000032_00388582_00397426 HMBOX1A, HMBOX1B, HMBOX1 coding upstream 333331 388367 ~ 397487 (+)
CI01000032_00367671_00375509 KCNK13, KCNK13A coding upstream 355018 366723 ~ 375800 (+)
CI01000032_00767450_00771237 MANEA coding downstream 33622 767076 ~ 771395 (+)
CI01000032_00778485_00779572 FUT9A, FUT9 coding downstream 45031 778485 ~ 780766 (+)
CI01000032_00799216_00801849 FHL5 coding downstream 65381 798835 ~ 801969 (+)
CI01000032_00811247_00821148 NA coding downstream 77793 811247 ~ 821234 (+)
CI01000032_00846052_00850360 COL10A1A coding downstream 112598 846052 ~ 850857 (+)
G165317 NA non-coding upstream 21416 704041 ~ 709402 (+)
G165313 NA non-coding upstream 39328 690841 ~ 691490 (+)
G165299 NA non-coding upstream 84196 646335 ~ 646622 (+)
G165242 NA non-coding upstream 124069 606379 ~ 606749 (+)
G165236 NA non-coding upstream 124698 604364 ~ 606120 (+)
G165316 NA non-coding downstream 134 733588 ~ 735138 (+)
G165512 NA non-coding downstream 139766 873220 ~ 873489 (+)
CI01000032_01000707_01061531 GRIA3B, GRIA3 non-coding downstream 322421 999178 ~ 1061833 (+)
G165506 NA non-coding downstream 352470 1085924 ~ 1087253 (+)
G165505 NA non-coding downstream 366164 1099618 ~ 1102526 (+)
G165570 NA other downstream 616124 1349578 ~ 1357567 (+)
CI01000032_01698448_01701006 NA other downstream 965034 1698448 ~ 1701288 (+)
CI01000032_02773889_02774396 NA other downstream 2025278 2773889 ~ 2774501 (+)
G166734 NA other downstream 2101860 2835314 ~ 2849684 (+)
G166765 NA other downstream 2223334 2956788 ~ 2957213 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location