G165317


Basic Information

Item Value
gene id G165317
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 704041 ~ 709402 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU187779
GACAAAGATGAGAGCCCCTGTGCCACGAAATATCATCTCATAGTCAAATGTGGGGTCGAAGAAATCAATCTGACCAGGAAAGTCCCAGATTTGGAAGCTGACAAAGGAACTGTTGGAAACATCCTCTCGACAAATCTTATTGGTGCTCTCCAGAAAGAGAGTCTCATTGGGTGACATCTTGTGGAATACAACTTTCTGAATGGAAGACTTGCCACTTCGCCTCAGGCCCATGAGCAGGATCCGAGGTTTCACCTCACTGCTGAACGGATCACTGAACCCCAGCACTCCTTCATCACAGCAGTCTCCGTCCCCGTCAGTGAATGTGTCGAAATCATCATCGTCGTCATAATAATCAAACGACAGCGCTTCGTTTTCTCCGTCCACTTCAATGTAGTTCCGTTCGCTTGTCATTCTCCGAGTTTAAGAAATTTAATCTGAGGAGACAGTCAAACTTTTCCACATTGTCACCTGATATGGCCAAGCCATGGTGAACTTTCACCTCCCCCCTCTCTCACACACTCAAAGCAGCCCGCCTGCGCGAGGAATCACAGCACACTGAGACTATTCATCACCATCATCACAGAATGAAGAGCTGCAGTGCTGAAAAACTTTGTCAGAGAAGAGTGAGAGGACGCCTCCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU187779 True 641 lncRNA 0.48 2 704041 709402

Neighbor

gene id symbol gene type direction distance location
CI01000032_00541441_00550673 MAP7A coding upstream 153292 541441 ~ 550749 (+)
CI01000032_00503123_00508468 PNOCA coding upstream 195554 503123 ~ 508487 (+)
CI01000032_00388582_00397426 HMBOX1A, HMBOX1B, HMBOX1 coding upstream 306554 388367 ~ 397487 (+)
CI01000032_00367671_00375509 KCNK13, KCNK13A coding upstream 328241 366723 ~ 375800 (+)
CI01000032_00327020_00343184 NA coding upstream 360813 326645 ~ 343228 (+)
CI01000032_00716503_00725057 NA coding downstream 7101 716503 ~ 725436 (+)
CI01000032_00731152_00733159 GJA10, CX52.7 coding downstream 21416 730818 ~ 733454 (+)
CI01000032_00767450_00771237 MANEA coding downstream 57674 767076 ~ 771395 (+)
CI01000032_00778485_00779572 FUT9A, FUT9 coding downstream 69083 778485 ~ 780766 (+)
CI01000032_00799216_00801849 FHL5 coding downstream 89433 798835 ~ 801969 (+)
G165313 NA non-coding upstream 12551 690841 ~ 691490 (+)
G165299 NA non-coding upstream 57419 646335 ~ 646622 (+)
G165242 NA non-coding upstream 97292 606379 ~ 606749 (+)
G165236 NA non-coding upstream 97921 604364 ~ 606120 (+)
G165284 NA non-coding upstream 102355 600922 ~ 601686 (+)
G165316 NA non-coding downstream 24186 733588 ~ 735138 (+)
G165512 NA non-coding downstream 163818 873220 ~ 873489 (+)
CI01000032_01000707_01061531 GRIA3B, GRIA3 non-coding downstream 346473 999178 ~ 1061833 (+)
G165506 NA non-coding downstream 376522 1085924 ~ 1087253 (+)
G165505 NA non-coding downstream 390216 1099618 ~ 1102526 (+)
G165570 NA other downstream 640176 1349578 ~ 1357567 (+)
CI01000032_01698448_01701006 NA other downstream 989086 1698448 ~ 1701288 (+)
CI01000032_02773889_02774396 NA other downstream 2049330 2773889 ~ 2774501 (+)
G166734 NA other downstream 2125912 2835314 ~ 2849684 (+)
G166765 NA other downstream 2247386 2956788 ~ 2957213 (+)

Expression


Co-expression Network