Gene
RNA
| Item | Value |
|---|---|
| gene id | G174365 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000036 |
| NCBI id | null |
| chromosome length | 2115676 |
| location | 1709873 ~ 1710209 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU198019 | True | 337 | lncRNA | 0.45 | 1 | 1709873 | 1710209 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000036_01611248_01620780 | ZNF804A | coding | downstream | 88484 | 1611119 ~ 1621389 (-) |
| CI01000036_01475403_01476425 | NA | coding | downstream | 233182 | 1475403 ~ 1476691 (-) |
| CI01000036_01466321_01474630 | NA | coding | downstream | 235243 | 1465479 ~ 1474630 (-) |
| CI01000036_01428324_01454913 | ITGAV | coding | downstream | 254088 | 1428287 ~ 1455785 (-) |
| CI01000036_01417031_01422737 | UMPS | coding | downstream | 287136 | 1416887 ~ 1422737 (-) |
| CI01000036_01763171_01765280 | NA | coding | upstream | 52266 | 1762475 ~ 1765385 (-) |
| CI01000036_01782319_01786637 | NUP35 | coding | upstream | 71752 | 1781961 ~ 1786637 (-) |
| CI01000036_01839255_01848818 | CUNH3ORF70 | coding | upstream | 126940 | 1837149 ~ 1848818 (-) |
| CI01000036_01850532_01860056 | EHHADH | coding | upstream | 140252 | 1850461 ~ 1860056 (-) |
| CI01000036_02022324_02026053 | NA | coding | upstream | 311738 | 2021947 ~ 2031983 (-) |
| G174363 | NA | non-coding | downstream | 32915 | 1676588 ~ 1676958 (-) |
| G174320 | NA | non-coding | downstream | 43173 | 1664202 ~ 1666700 (-) |
| G174319 | NA | non-coding | downstream | 46386 | 1653986 ~ 1663487 (-) |
| G174318 | NA | non-coding | downstream | 69735 | 1628159 ~ 1640138 (-) |
| G174357 | NA | non-coding | downstream | 106988 | 1602531 ~ 1602885 (-) |
| G174366 | NA | non-coding | upstream | 11942 | 1722151 ~ 1722529 (-) |
| G174388 | NA | non-coding | upstream | 153548 | 1863757 ~ 1864342 (-) |
| G174002 | NA | other | downstream | 434678 | 1274778 ~ 1275195 (-) |
| G173528 | NA | other | downstream | 749496 | 959421 ~ 960377 (-) |
| G174386 | NA | other | upstream | 154725 | 1864934 ~ 2010840 (-) |
