CI01000039_04495351_04521800 (ATXN2)


Basic Information

Item Value
gene id CI01000039_04495351_04521800
gene name ATXN2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 4495351 ~ 4522319 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000039_04495351_04521800.mRNA
TTATCTATTATCAAGCTTATCTATCATGCTGTTTTCTTTCTTCGCTACAGAGGACGCAACAATGCCAAAGGACCTTCCACTGCAGGAAACAAATGTGAACTTAAGGTTAAAAATGGACTAATCTATGAAGGAGTTTTTAAAACCTATGGCCCAGAGTGTGAAATTGTCCTGGATGCTGCACACAGGAAGAGTGTAGAACCTAATGTGGGCCCTCGCCGTGAGGATATTGTGGAGAGCATCATCTTCAAGTCCTCAGATGTAGTGGTAGTTCATTTCAAAGATGTAGACCTCAACTATGCCAAGAAAGATAACTTCACAGACAGTGCGGTAAGTGCCCGTCTGAATGGAGAGCACAAAGAGAAGGATCTGGAACCCTGGGATGGAGGGGAGCAGCACATCTCGGGCAGCATGGAATCTCTTGACACTGATCTGTCAAATGGTTGGGATCCTGATGAGATGTTTAAATACAATGAGGAGACATATGGCGTGAAATCCACCTATGACAGCAGCCTGTCATCATACACGGTTCCCTTGGAACGAGACAACTCTGAGGAGTTCCTCAAGCGCGAGGCTCGTGCATCACAGCTGGCGGAGGAGATTGAAGCCAGTGCCACCTACAAGGCCCGTGTGGCCTTGGAGAATGACGACCGCTCAGAGGAAGAGAAATACACTGCTGTGGTTCGTGGAGAGAGGGAGCTTCACAGCCTCAACAGAGAGAACAAATACATTCCCCCTAGTCAGAGGAACAGAGAACCAGGGATGTCATGGGGAGCTGGTCGGCAAAATTCACCCAGACTGGTTCAGTGTAGCCCTGGGCCACCCACACCCAGATCTGGATCTCACGACTACAACGCAATGGATCAGCGAGTGGTCAATGGAGGTGCACACCCTTGGCCCTCACGCTGCCCATCTCCCTCCTCTCGCCCTCCATCCCGTTACCAGTCAGGCCCCACCAACTCTCTCCCACCCCGGGCGGCCACGCCCACCCGGCCTCCCTCCAGACCCCCATCCAGGCCCTCACGGCCCATGTCTCACCCCTCTGCTCATGGCTCTTCAGGGCCTCTGTCCACCATGCCTAAACGCCTGTCCTCAGAAGGACTGGCATTGTATTTTGGCCATGGGGACACAACTGGCAATGCCCAAGTGTTTCTTTCCATGTCTGATATTGGCTTGACATTGTATTCTTGTACATCAAATGAGAAACTGTCACAGCCTCTTAAGTTCAAATGTATATCAGGTCCTCCGAGAATGTCTCCCAAGTCACAGCGAACTCCGAGACCTCATAGAGTGCCCTCTTGTCGGGGCGGTGGGCCTCCTCCTCCTGATTATATGTCTCCAGGTGCATCGGTGGAGGTTTCTGCTCCCCCTCTTGCTCGCAACAGCCCTTCTGGGGGAACATGGTCATCTGTTGTCAGTGGTGCACACAGACCTCGTTCACCTCGACAGAATAGCGTTGGTGGAGGTGCTCCCAGCTCCTCCTGCTTGTCTTCCCCTCAGGCTGGTACAGTGCCAGTAGACTCTGTGACAGCTTCCACAACAGCGACGTCACCCACTGCAGCTAACCCGGCCACCAACCTGGACGCATCTCCAATAGAAGAGGCCAAAGAATTAAGAGTACTAGAGACAAGACAGAATTCTCCCAATGCCAACAAAGAGAATGTGAAGCCTATTGAAGCTTCTGCAAGCATCGCTCGATCCATCGGCAAGGGGCTTCCCAACATGGCTCCGGATCAAAGGAAACAAATAGATAATTTAAGGAAATTCAGTGTAGATTTTAGGTTGCCGTCTAGCTCAAATCCAGATCCAGTTCTTGAGCCCATGGTGACCAAGACTCCAAGGGACCTTGGAGAAAAGCCAAAGGATCAAGCAGCTGAGAAGAGCGCAGTAGATTCAACAGGTCCCAAAGTCTCCATGGAGTCCGGCATTAATGAAGAAACCTCCACTTCTGTGAGTGTTGCCCTTGCAGGAAGTAAATCTGGTACCCCTTCACTCTCTCCTTCCTCTGCTGTACCAGAGCAGAAACGAGGGCCTGATGTGACATCTCAGGGCGTCCAGACCACCTTGCCTCTTGCCAACACTGCTGCAAAAGATAAGGATGAGAAGGAGGAGAAGAATGACCCTGTAGCAGAGAGTGTTAGAAAATCTACTCTCAATCCCAATGCCAAGGAGTTCAACCCAAGGGTTTTTTGCTCCCCCCCTAAACCAGCAACAACCCCCACTCTGACCCGACCTCAGGGTCAGCCCAGCCCTTCCATCGTAGTACAGCAGCCCCCTGCTGTCTATGGTCAGACCATGTTCCAGATGTACCCTCTGACCCCTGTCAGCCCTGGCGTTCAGCCTCCAGCCATGTACCATGTTCAGGTTCCTCATATGGCCATGAGCCAGACCAAGCCCTACAGACCAGGTAAAGTACCGAACATGCCACAGCAAAGGCCAGACCAGCATCACCCACCTGGCACATCTACAATGATGCATCCAGCTACAGCTGCCGGGCCGCCCATCGTGGCACCAAACCCAGCCTACTCCACACAATACTTCACTTGTAGCCCCCAGCAGTTTGCCAGTCAACCTCTGGTACAACAGATGCCCCACTACCAGTCCCAGGCCCAGCATGTGTTCAGTCCAATGATTCAGGGCAGTGCGAGGATGATCACCCCTCCTGGCCACGGCCAGCCCAGCCTGGTCTCTTCCTCCACCACTCAGTATGGTGAGCAGACGCATACTATGTATGTGTCACCTACCCCCATTCCTCAGCAGTTTCCCCACCCAAGCTCTACCCTGCACCCTCATCCACAGCACCCTCAGCCCTCTGCCACCCCGACAGGACAACCGCAGCAGGGTAACCAACACGGAGGCAGCCATCCGGCCCCCAGCCCCGTTCAGCATCCCCAGCACCAGGCTGCAGCCCAGGCCATGCACCTGGGCAACCCACCACAGCAGCAGATGTACTCTGCCCTGGCTCCCACCCCGCCCTCCATGACCCCCGGCCCCAACCCACAGTCCCCTCAAGCCAGCTTTCCCTCCGCTCAGCAGACCGTCTACATCCACCCCCAACAGGTGCAGCATGGGTACAACCCTAACCATATGGCTCATGTGCAGCAGGCCCACATGCAGTCAGGGATGGTGCCTCAGCATCATGGCACTCCTTCCCACCCTCCCACTATGATGTTGATGGCCACACAGGCTCCTACTGGCCCCCAACCTGCGCTGCCCCAGGGAACTCTCAACCCCATCCCTGTGTCATCAGCCACACACTACTCCTACACTCTCACCCCTGGTAAGGACCTATCTCAACTGAACACATAGAGAATTAAATTGGGAGAAAAAAAAAAATATTTTTTTATATATCTAGAAATTATTAATTATTATTATTATTATTATTATTATTATTATTATTTTGTATAATTATTTTGTCTTATCTAAAAAATAATAATAAATATTGTATAACCGTGTTTGTTTTATCTAAATAATAATATTTTTAAGATTTTTTTAAATGAACAAAATAATAAAATACCTTTTTTTTTCCCCTTTTTTATTGAAAACAAAGATCTAAGGTTCATCATGGGTGTTACAATGTCAGGTCACAGTACGTTTTCAACATACATCTTGATATACAATTTAACACTTTTCTAAATGTATATACATAATTCAGTTTTCCCAATACTTGTTACTTTTTTTTTTTAAATTGATTTTATTAAATGTGAGTCTCTAGTCAGTATATTTCAGTAAATTATGGCTTTCCTACTAGCTACTACTTTAGCTTTACTACTACACTAGTATTTATTCTTGTCTAAAACCGTTTTTGGTTTCCCGAGGTGCAATGTA

Function

symbol description
atxn2 Predicted to enable RNA binding activity. Predicted to be involved in stress granule assembly. Predicted to be active in cytoplasmic stress granule. Is expressed in gut; motor neurons; and spinal cord. Human ortholog(s) of this gene implicated in late onset Parkinson's disease and spinocerebellar ataxia type 2. Orthologous to human ATXN2 (ataxin 2).

GO:

id name namespace
GO:0010494 cytoplasmic stress granule cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000039_04495351_04521800.mRNA True 3825 mRNA 0.50 21 4495351 4522319

Neighbor

gene id symbol gene type direction distance location
CI01000039_04470958_04472248 ALKBH2 coding upstream 22702 4470910 ~ 4472649 (+)
CI01000039_04468348_04468960 NA coding upstream 26115 4468348 ~ 4469236 (+)
CI01000039_04454768_04457234 NA coding upstream 38081 4454243 ~ 4457270 (+)
CI01000039_04446796_04449452 NA coding upstream 45894 4446557 ~ 4449457 (+)
CI01000039_04422021_04434173 NA coding upstream 61124 4421859 ~ 4434227 (+)
CI01000039_04523686_04528060 RIOK2, RIOK2.L, RIOK2.S coding downstream 1335 4523654 ~ 4528060 (+)
CI01000039_04528742_04557188 EPG5 coding downstream 6423 4528742 ~ 4557324 (+)
CI01000039_04569279_04580845 DNAJB5 coding downstream 45175 4567494 ~ 4580948 (+)
CI01000039_04589265_04593416 AKR1A1A coding downstream 66728 4589047 ~ 4593572 (+)
CI01000039_04616410_04621885 EEF2L2, EEF2.1.L, EEF2.2, EEF2, MGC68699 coding downstream 94091 4616410 ~ 4621885 (+)
G180224 NA non-coding upstream 74405 4420600 ~ 4420946 (+)
G180223 NA non-coding upstream 76700 4418248 ~ 4418651 (+)
G180212 NA non-coding upstream 85595 4409522 ~ 4409756 (+)
G180210 NA non-coding upstream 88071 4407023 ~ 4407280 (+)
G180166 NA non-coding upstream 243089 4249474 ~ 4252262 (+)
G180214 NA non-coding downstream 71514 4593833 ~ 4595443 (+)
G180257 NA non-coding downstream 106657 4628976 ~ 4629213 (+)
G180255 NA non-coding downstream 106958 4629277 ~ 4629931 (+)
G180256 NA non-coding downstream 108615 4630934 ~ 4631394 (+)
G181107 NA non-coding downstream 247705 4770024 ~ 4770239 (+)
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L other upstream 270694 4223868 ~ 4224657 (+)
G180156 NA other upstream 403743 4090998 ~ 4091608 (+)
G180149 NA other upstream 415788 4079419 ~ 4079563 (+)
CI01000039_04048342_04049635 NA other upstream 445379 4048079 ~ 4049972 (+)
G179903 NA other upstream 1069796 3424037 ~ 3425555 (+)
CI01000039_04829464_04847182 ZFR other downstream 321863 4829413 ~ 4848563 (+)
CI01000039_07324920_07329407 NA other downstream 2798365 7324596 ~ 7329472 (+)
CI01000039_07898330_07904918 DPF2 other downstream 3373557 7896773 ~ 7905162 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031320 atxn2 coding NC_007116.7 CM002889.2 41645479 ~ 41709234 (-)
bowfin (Amia calva) AMCG00018882 NA coding CM030135.1 CM030135.1 24466411 ~ 24505090 (-)