XLOC_009138 (btr21)


Basic Information

Item Value
gene id XLOC_009138
gene name btr21
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 18212190 ~ 18218227 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017988
CAGATAACATCAGAGAAAGAGAAGGCTGAGAGCACTGAGCTCTTTGCTGATCTGATACGCTGCATTAAAATATGTCAATCTGAGCTGTTGGAGATGAAGGAACAAAAGCAGAAAGCTGCAGAGAAGCAGGCCCAAGAGCTGATTAAAGATCTGGAGCAGGAGATCACTGAGCTGAAGAGGAGAGATGCTGAGCTGGAGCAGATCTTACACACTGAGGATCACCTGCACCTCCTGCAGATTTACCCAGAGCTGAGCAAACCTCCACACACCAGCAGCTGGACTCACGTCAGTATCAGTGACACTCAGCTGAGTGTGGAGACTCTGAGGAAAACTCTTACACAGCTGCAAGACACTCTCAATGACAAACTCAGCACAAATGTGGttatctgctctcactttctTTCAGTGGATGTGACTCTGGATCCTAACACAGCTCATCCAAAACTCATCCTGTCTGATGATGGAAAACAAGTGACCTTTGGAGACAAAGAACTTAAACTCTTAAACAACCCAGAGAGGTTTGATTGTTGTCCATGTGTCCTGGCAAAAGAGAGATTCAGCTCAGGGAGATTTTATTTTGAGGTGCAGGTAAAAGAAAAGACTGATTGGGATTTAGGAGTGGTCAGAGAATCCATTAACCGGAAGGGAGATATCACAGCTGCACCTGAGGCTGGATACTGGATTATAATGCTGAGGAATGAGAATCAGTATCTTGCAATTGATTCTtcttctgtctctctgtctctgagAGTGAAGCCTCAGGTTGTGGGTGTGTTTGTGGATTATGAGGAGGGTTTGGTCACTTTTTATGATGTGGAGTCCGGgtcttttatttattctttcactgGTCAAACTTTCTCTGAGAAACTCTCTCCATATTTTAGCCCTTATCAAAATAATGGAGGTAGAAACACAGCTCCACTGATCATCTCACATGTcagaaagaatgaatga
>TCONS_00017989
ATGGCAGAATCGACATCAGGATCACCAAAACACAACCCGGCCAGGAGAAGTAGTCTGGATGCACCTCCATTATCTCTGTCAGCTTTGTCAAAGGAGCTCCAGTGCTCAATCTGTCTGGATGCGTTCACTGATCCACTCAGCACTCCATGTGGACACAACTTCTGTAAGAGCTGCCTGAACCAGTGCTGGAACAACAGCCAAACCTACAACTGTCCATTCTGTAAAgacacattcagttacagaccAGAGCTCAAGATCAACACAGCACTCAGACAGCTTGTGCAGGTGTTTAGGCAGAATGTTCCTGAGAAAAAATCTGAAGTTCTCTGTGATATTTGTGATGGTATGAAGATGAAAGCCTTTAAGATTTGTCTGACGTGTCAGAGCTCATACTGTGAAACTCACCTGGAGCCTCATCAGAGAGTCCCAAATTTGAAGAAACACACATTGATTGATCCTGAGGGGAATGTTGAGAATTATATATGCAAGAAACATGAGAAACCTCTGGAGTTGTTCTGTAGAGATGATCAGACAAGTGTGTGCTCTCTATGTGCTGTGACAGACCACAGGAATCACAACACTGTTGTTGTGGAAGTGGAGAGCAAAGAGAAGAAGCCTCAGCTGATAAAGATACAAACAGATGTGCAGCAGATGATCCAGgacaaattgaaaaaaattcaAGAGATCAGACACCTAGAAGAACTCAGAATGATAACATCAGAGAAAGAGAAGGCTGAGAGCACTGAGCTCTTTGCTGATCTGATACGCTGCATTAAAATATGTCAATCTGAGCTGTTGGAGATGAAGGAACAAAAGCAGAAAGCTGCAGAGAAGCAGGCCCAAGAGCTGATTAAAGATCTGGAGCAGGAGATCACTGAGCTGAAGAGGAGAGATGCTGAGCTGGAGCAGATCTTACACACTGAGGATCACCTGCACCTCCTGCAGATTTACCCAGAGCTGAGCAAACCTCCACACACCAGCAGCTGGACTCACGTCAGTATCAGTGACACTCAGCTGAGTGTGGAGACTCTGAGGAAAACTCTTACACAGCTGCAAGACACTCTCAATGACAAACTCAGCACAAGTGTGCTGAAGACGATGCAGCAACATGCAGTGGATGTGACTCTGGATCCTAACACAGCTCATCCAAAACTCATCCTGTCTGATGATGGAAAACAAGTGACCTTTGGAGACAAAGAACTTAAACTCTTAAACAACCCAGAGAGGTTTGATTGTTGTCCATGTGTCCTGGCAAAAGAGAGATTCAGCTCAGGGAGATTTTATTTTGAGGTGCAGGTAAAAGAAAAGACTGATTGGGATTTAGGAGTGGTCAGAGAATCCATTAACCGGAAGGGAGATATCACAGCTGCACCTGAGGCTGGATACTGGATTATAATGCTGAGGAATGAGAATCAGTATCTTGCAATTGATTCTtcttctgtctctctgtctctgagAGTGAAGCCTCAGGTTGTGGGTGTGTTTGTGGATTATGAGGAGGGTTTGGTCACTTTTTATGATGTGGAGTCCGGgtcttttatttattctttcactgGTCAAACTTTCTCTGAGAAACTCTCTCCATATTTTAGCCCTTATCAAAATAATGGAGGTAGAAACACAGCTCCACTGATCATCTCACATGTcagaaagaatgaatga

Function

symbol description
btr21 Predicted to enable zinc ion binding activity.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081031-80 Predicted to enable zinc ion binding activity.

Ensembl:

ensembl_id ENSDARG00000058329

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017988 False 954 mRNA 0.44 3 18212190 18213515
TCONS_00017989 True 1662 mRNA 0.44 7 18212190 18218227

Neighbor

gene id symbol gene type direction distance location
XLOC_009137 btr16 coding downstream 2467 18198878 ~ 18209723 (-)
XLOC_009136 btr04 coding downstream 11832 18189645 ~ 18200358 (-)
XLOC_009135 CR388163.1 coding downstream 31366 18177941 ~ 18180824 (-)
XLOC_009134 tmprss5 coding downstream 35066 18164054 ~ 18177124 (-)
XLOC_009133 pih1d2 coding downstream 49543 18157665 ~ 18162647 (-)
XLOC_009139 or131-1 coding upstream 3632 18221859 ~ 18223769 (-)
XLOC_009140 wu:fj20b03 coding upstream 12267 18230494 ~ 18232712 (-)
XLOC_009141 or131-2 coding upstream 20192 18238419 ~ 18240199 (-)
XLOC_009142 zbtb16b coding upstream 35315 18253542 ~ 18361475 (-)
XLOC_009143 ncam1b coding upstream 150582 18368809 ~ 18574716 (-)
XLOC_009132 CR388163.2 non-coding downstream 60410 18151665 ~ 18151780 (-)
XLOC_009127 BX901923.1 non-coding downstream 342100 17844191 ~ 17870090 (-)
XLOC_009125 NA non-coding downstream 457264 17751150 ~ 17754926 (-)
XLOC_009122 CR848791.2 non-coding downstream 829608 17379512 ~ 17382582 (-)
XLOC_009145 AL845312.1 non-coding upstream 876284 19094511 ~ 19095107 (-)
XLOC_009147 NA non-coding upstream 1066937 19285164 ~ 19286600 (-)
XLOC_009150 BX324206.1 non-coding upstream 1139043 19357270 ~ 19357389 (-)
XLOC_009151 BX324151.1 non-coding upstream 1324593 19542820 ~ 19542934 (-)
XLOC_009152 CU013548.1 non-coding upstream 1363680 19581907 ~ 19583015 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_01563021_01566321 NA coding CI01000053 null 1562966 ~ 1566321 (+)