CI01000040_02602517_02603172


Basic Information

Item Value
gene id CI01000040_02602517_02603172
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 2602357 ~ 2603623 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_02602517_02603172.mRNA
CTATATAAACCTAGATTTTATCATGAAGTATAATCATTTAAATCTTTCAGAAATCTTATTATTTTTGCATTGTTGTGTTACTCCATATACCATCTATGCTAAACAAAAAGAAATTTCATAAGAAATCCATAATATGTTATATAAAATACACATTTTAGTCATGTCCCCAGGTTTTCACTCAGTCCTGTTACCCTCACACATTTCCCCCTCTAAAAAACTTGCCACAAGACACATTTTGAACAGGAAGTTGCATCATCTGGATCTTATGCAGGCCATGAGAAGACCAAAAAAGATGGAGAGAACCCATACTATGCAGTTGGCAGAAACACCCACCCATGGCATGCTGCAAGGGAAGGAGTGAAACACACCTGCAACCCTCTCTTTTTCCCCCTTTTTTGTCTTTCCTTCCCTCCCTCTCCCCCCTCTCTCTTTTCCTCTCTGTCCTTCTTTCTCTTTCCACCTCCTTCAGTACTGTGAAGTACTACTAGCACACAGCACATCCCTTCAACACAGAAATCTCACTCACACACATGCACACACATATGGACACTCATTCCTGTTACTAAATTTATTTATTTTTCTAAAAAAATAAAGATAAACCACTGTTTTTATCAGTTTTGTTTGATCCATCATTTACGCAATTGTTAAATAAATTAAATAATTTAAAAAATTATAAACTTGAGGCTTCTGTCTTCTTTTAAATGAAAAAATTGTTTTGCGTTTTTTATTAAAATACACCTTGCCTTAATATAAAGTGACTTTTTTGCCACAAATATCAATTATTTGAACAAATATCCAACCATTTCTTTAAA
>TU210135
AAATTACTTAAGTTGTAGATTTTTAGGATTAGTTTTACGATGTGAATACCATACTTGCAGGGAGCCAGTCCACCACGAACTGACTTAATCTTTTTGTCTTTTTCTTTCTTCTCTTTTGTAGAAGATGGAGAGAACCCATACTATGCAGTTGGCAGAAACACCCACCCATGGCATGCTGCAAGGGAAGGAGTGAAACACACCTGCAACCCTCTCTTTTTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_02602517_02603172.mRNA False 812 mRNA 0.34 2 2602357 2603623
TU210135 True 221 lncRNA 0.42 1 2602980 2603200

Neighbor

gene id symbol gene type direction distance location
CI01000040_02558495_02563310 NA coding upstream 38811 2558383 ~ 2563546 (+)
CI01000040_02475489_02482435 NA coding upstream 119842 2475489 ~ 2482515 (+)
CI01000040_02444252_02460962 NA coding upstream 141395 2443561 ~ 2460962 (+)
CI01000040_02315449_02344137 GABRQ, GABRB4 coding upstream 258044 2315449 ~ 2344313 (+)
CI01000040_01882704_01887004 BRCC3 coding upstream 715222 1881793 ~ 1887135 (+)
CI01000040_02609749_02611069 ARHGAP26 coding downstream 6126 2609749 ~ 2611235 (+)
CI01000040_02650575_02692600 NA coding downstream 45920 2649543 ~ 2692671 (+)
CI01000040_02889343_02891410 KCTD16B, KCTD16 coding downstream 285720 2889343 ~ 2891439 (+)
CI01000040_02975088_02975548 NA coding downstream 371465 2975088 ~ 2975946 (+)
CI01000040_03168337_03198400 RBM27 coding downstream 564714 3168337 ~ 3198400 (+)
G185029 NA non-coding upstream 1705 2600430 ~ 2600652 (+)
G185028 NA non-coding upstream 3420 2598521 ~ 2598937 (+)
G184989 NA non-coding upstream 59225 2542805 ~ 2543132 (+)
G184987 NA non-coding upstream 60946 2541171 ~ 2541411 (+)
G184982 NA non-coding upstream 160137 2441978 ~ 2442220 (+)
G185084 NA non-coding downstream 200640 2804263 ~ 2804512 (+)
G185105 NA non-coding downstream 226643 2830266 ~ 2830567 (+)
G185110 NA non-coding downstream 230778 2834401 ~ 2834638 (+)
G185114 NA non-coding downstream 243467 2847090 ~ 2847351 (+)
G185115 NA non-coding downstream 244209 2847832 ~ 2848524 (+)
G184003 NA other upstream 1365868 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 1624194 977184 ~ 978163 (+)
CI01000040_00240852_00305487 GABRB2 other upstream 2325502 240849 ~ 313275 (+)
G183420 NA other upstream 2437435 157543 ~ 164922 (+)
G183366 NA other upstream 2541960 53691 ~ 60397 (+)
G185296 NA other downstream 729955 3333578 ~ 3333983 (+)
G185884 NA other downstream 1135364 3738987 ~ 3739281 (+)
G185947 NA other downstream 1370142 3973765 ~ 3974123 (+)
G187510 NA other downstream 3365422 5969045 ~ 5971732 (+)
G188149 NA other downstream 4205068 6808691 ~ 6809130 (+)

Expression


Co-expression Network