Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000040_04938039_04944194 |
| gene name | WDR55 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000040 |
| NCBI id | null |
| chromosome length | 6879596 |
| location | 4935989 ~ 4944391 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| wdr55 | Involved in eye development; pharynx development; and swim bladder development. Acts upstream of or within thymus development. Predicted to be located in nucleolus. Orthologous to human WDR55 (WD repeat domain 55). |
| id | name | namespace |
|---|---|---|
| GO:0042273 | ribosomal large subunit biogenesis | biological_process |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000040_04938039_04944194.mRNA | True | 3231 | mRNA | 0.36 | 6 | 4935989 | 4944391 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000040_04931322_04935827 | NA | coding | upstream | 92 | 4931192 ~ 4935897 (+) |
| CI01000040_04868857_04925336 | NA | coding | upstream | 10157 | 4868857 ~ 4925832 (+) |
| CI01000040_04539382_04571810 | TRPC5 | coding | upstream | 364023 | 4538950 ~ 4571966 (+) |
| CI01000040_04503393_04506409 | HMGB3B | coding | upstream | 429580 | 4501723 ~ 4506409 (+) |
| CI01000040_04475476_04499896 | NA | coding | upstream | 435876 | 4475312 ~ 4500113 (+) |
| CI01000040_04956324_04970782 | CDC23.L, CDC23 | coding | downstream | 11754 | 4956145 ~ 4970914 (+) |
| CI01000040_05011735_05014939 | NA | coding | downstream | 67344 | 5011735 ~ 5015325 (+) |
| CI01000040_05033284_05043565 | NA | coding | downstream | 88808 | 5033199 ~ 5043565 (+) |
| CI01000040_05047319_05069572 | NA | coding | downstream | 102780 | 5047171 ~ 5069685 (+) |
| CI01000040_05088429_05089430 | NA | coding | downstream | 141858 | 5086249 ~ 5090404 (+) |
| G186632 | NA | non-coding | upstream | 243566 | 4691360 ~ 4692423 (+) |
| G186601 | NA | non-coding | upstream | 265398 | 4667662 ~ 4670591 (+) |
| G186026 | NA | non-coding | upstream | 358524 | 4573811 ~ 4577465 (+) |
| G186128 | NA | non-coding | upstream | 525783 | 4409919 ~ 4410206 (+) |
| G186040 | NA | non-coding | upstream | 678699 | 4254987 ~ 4257290 (+) |
| G186741 | NA | non-coding | downstream | 32008 | 4976399 ~ 4976882 (+) |
| G186689 | NA | non-coding | downstream | 34235 | 4978626 ~ 4996279 (+) |
| G186696 | NA | non-coding | downstream | 71257 | 5015648 ~ 5016015 (+) |
| G186760 | NA | non-coding | downstream | 100659 | 5045050 ~ 5045585 (+) |
| G186762 | NA | non-coding | downstream | 125823 | 5070214 ~ 5070416 (+) |
| G185947 | NA | other | upstream | 961866 | 3973765 ~ 3974123 (+) |
| G185884 | NA | other | upstream | 1196708 | 3738987 ~ 3739281 (+) |
| G185296 | NA | other | upstream | 1602006 | 3333578 ~ 3333983 (+) |
| G184003 | NA | other | upstream | 3699500 | 1230292 ~ 1236489 (+) |
| CI01000040_00977184_00977458 | NDUA2, NDUFA2 | other | upstream | 3957826 | 977184 ~ 978163 (+) |
| G187510 | NA | other | downstream | 1024654 | 5969045 ~ 5971732 (+) |
| G188149 | NA | other | downstream | 1864300 | 6808691 ~ 6809130 (+) |
| CI01000040_06833701_06848731 | NA | other | downstream | 1893733 | 6832987 ~ 6849135 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_019064 | wdr55 | coding | NC_007132.7 | CM002905.2 | 34814444 ~ 34843004 (+) |
