CI01000040_04503393_04506409 (HMGB3B)


Basic Information

Item Value
gene id CI01000040_04503393_04506409
gene name HMGB3B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 4501723 ~ 4506409 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_04503393_04506409.mRNA
GTTTAAAATGGCTGGCTATGTAAAAAATCTGCTTCAAACAAACAACGGGCGGCTAAATGGCCTGAAAGGCTGTCGTGAAGTGCTTAGTGTTTCATCGCTGTGTTTGCTGCGTAATAGTTTAATTTTGTTGTATATTTACTGGTTATAGGGTGCATTGAGCTGTTAAAGCGCTGTTAACGGCCAATGCCAGTCATGGCTGGTTTGACTCTGCCTTTGTTGCAAACGGGTTTGTGCCGGGCGCGAATTTGCGAATCCTACTATTGTGAAGGGTTGGCTCATGAATATTAATTAATTCGCTGACGTTGCTGCGTTAAGTCTCTACAGCGTGACCTAACTTAATATTCACAACGAACGCCTTCACTATAGTATGATTCGTTAATTCGCAGTGCCCCTAACGCCCACCTAATGCGTCTGCATGGCAACCAATCAGTTAGCAATGTGGGGCGAACGTCACGGTGCGTAATTAATATTCATGCCCTTATCCTTCACGTTAGTAGGATTCGTGATTTGCAGTGCAGTGTGGAACTGGTAGAACTTTGCAAAAGCTGACCTCGCTGTACATTGTGTTAAATAAACGACTTTTGAAATGTCGGCTTTGAAAAGTTGCTAGCTAAACTAAGCCCTCGTAGTGTCTCTTATGAAAATGGGGTTGCAAGTCATTGTTCCTCGCCGCTGATAGAGGCCATTTTAATGAATGGCGTCTGATTGAGTAGACGCGGCTAGTCATTCGCTGTCTTCACACATTGTCTGCTTTTAATCTAGGCTTCAAATAGCATCTTATTTGGGAAATAATCAGTAAATTGCAGCATTACGGTTAAAAATAAAATTTAGTTTCTGTCATCAATTTGCACTTCACAACACGAAAAATAAACAACAGTGCTTGATGGCACCTCGGGCGACGTGCAGAACAGAAGTTTATATATATATATATATAAAAAATCGGATTCTGGAAGTAAAAATCCCATTAGTTTTCTCTATAAAGTAATTTTTTTTTTTTTTCTTTTCTTTAGAATAGCTTATTAATCTTTAAAGACATAACTACTGTGAGCAACGAGGGTGGCAATTGATGGCATATTTCAATATTATTATTATTATTATTATTATTATTATTATTTTTATTTTTATTTTTTAATAAAAATTAACAGCAGAATTCCTGGTGATAAATATTACTCATGTTTCTGCAAAAAATGTCCACCAATCAGAGTATCGAAAGAAATTGCACCAAAAGAACTCTTTAGCACCTATCCACTCCCATGAAGCACTGCGGATGACGTAATAGTCAATCTTCCTATGGTTACGAGGGCACATGAAGTAATAAAAAAATGTGCATGAATGAATCTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTAAATACTGCAATATTCCATTTAAAAAAAAAAATAATGATAATAATTGTCAATTTTGATTTACTGGTGCATTAAACTGCTGAGAAAAAGTCTTTAGGGATCTGACGTCCCATATGTAATGTTGAATGAAAAGATGCATTTATGTGCAGTGAAACTGTGGCACTTAATCATTTTCGGTCCTCTCAGTATTATACATGCTTGTTTTAGTGTGTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAAATTCTGTGTACTTCTAGGTGTGGTGATATTTGAGTAGCTTCATAATAATGGCAAAGGGTGATCCAGGGAAGCCCAAGGGCAAGATGTCGGCCTATGCCTATTTTGTGAAGACGTGTCGTGAAGAGCACAACAAGAAGAACCCTGGTGTCACGGTTAACTTCTCAGAATTTTCCAAGAAGTGCTCTGAGAGATGGAAAACTATGTCACCAAAAGAGAAGACTAAATTTGAAGACCTGGCCAAACAGGACAAGGCCCGTTATGACCAGGAAATGATGCACTACAATCCAGGAAAAAAAGGTCGGAAGCAGAAGAAGGATCCTAATGCTCCAAGGCGGCCACCGTCTGGATTTTTCCTATTCTGTTCAGAGCAAAGGCCCAATATCAAGGCTGAGAACCCCAGCCTGGGCATTGGAGATGTAGCCAAGAAACTTGGAGAAATGTGGAACAATCTGTCTGATTCTGAGAAGCAGCCTTTCCTATCCAAGGCCAACAAACTGAAGGACAAGTATCAGAAGGATATGGCGGACTACAGAGGAAAGGGAAAAGGAAGTGGAGGAGCATCATCTGCCAAATCCAAACCCAAG

Function

symbol description
hmgb3b Predicted to enable DNA binding activity, bending. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in chromosome and nucleus. Is expressed in central nervous system; intermediate cell mass of mesoderm; ovary; and pectoral fin bud. Human ortholog(s) of this gene implicated in syndromic microphthalmia 13. Orthologous to human HMGB3 (high mobility group box 3).

GO:

id name namespace
GO:0045596 negative regulation of cell differentiation biological_process

KEGG:

id description
K11296 HMGB3; high mobility group protein B3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_04503393_04506409.mRNA True 2207 mRNA 0.38 4 4501723 4506409

Neighbor

gene id symbol gene type direction distance location
CI01000040_04475476_04499896 NA coding upstream 1610 4475312 ~ 4500113 (+)
CI01000040_04442810_04474877 MAP4K6 coding upstream 26599 4441797 ~ 4475124 (+)
CI01000040_04369595_04374831 NA coding upstream 126368 4368465 ~ 4375355 (+)
CI01000040_04063098_04068134 PPP2R2B coding upstream 433525 4062947 ~ 4068198 (+)
CI01000040_04047210_04060876 NA coding upstream 440048 4047210 ~ 4061675 (+)
CI01000040_04539382_04571810 TRPC5 coding downstream 32541 4538950 ~ 4571966 (+)
CI01000040_04868857_04925336 NA coding downstream 362448 4868857 ~ 4925832 (+)
CI01000040_04931322_04935827 NA coding downstream 424783 4931192 ~ 4935897 (+)
CI01000040_04938039_04944194 WDR55 coding downstream 429580 4935989 ~ 4944391 (+)
CI01000040_04956324_04970782 CDC23.L, CDC23 coding downstream 449736 4956145 ~ 4970914 (+)
G186128 NA non-coding upstream 91517 4409919 ~ 4410206 (+)
G186040 NA non-coding upstream 244433 4254987 ~ 4257290 (+)
G186064 NA non-coding upstream 249392 4252042 ~ 4252331 (+)
G186057 NA non-coding upstream 261444 4240066 ~ 4240279 (+)
G186041 NA non-coding upstream 275233 4214116 ~ 4226490 (+)
G186026 NA non-coding downstream 67402 4573811 ~ 4577465 (+)
G186601 NA non-coding downstream 161253 4667662 ~ 4670591 (+)
G186632 NA non-coding downstream 184951 4691360 ~ 4692423 (+)
G186695 NA non-coding downstream 415172 4921581 ~ 4946062 (+)
G186741 NA non-coding downstream 469990 4976399 ~ 4976882 (+)
G185947 NA other upstream 527600 3973765 ~ 3974123 (+)
G185884 NA other upstream 762442 3738987 ~ 3739281 (+)
G185296 NA other upstream 1167740 3333578 ~ 3333983 (+)
G184003 NA other upstream 3265234 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 3523560 977184 ~ 978163 (+)
G187510 NA other downstream 1462636 5969045 ~ 5971732 (+)
G188149 NA other downstream 2302282 6808691 ~ 6809130 (+)
CI01000040_06833701_06848731 NA other downstream 2331715 6832987 ~ 6849135 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location