CI01000040_04956324_04970782 (CDC23.L, CDC23)


Basic Information

Item Value
gene id CI01000040_04956324_04970782
gene name CDC23.L, CDC23
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 4956145 ~ 4970914 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_04956324_04970782.mRNA
GAATAAAAAGGCATAAGAGGCCTAAATAACGCCTCACAGATGCTTCATTACAAGCCAGTCAACAAGATAACATTTCTTTTAGATTTTAAACTCAAAGTACGAAAAAGGTTTTCTTTGATCCATCAGTGACCAATCAGCTCTTGCGCTGTGGGTGCGTCGGCATGACGTATTTATGAAAAATGGCGGCTACCCGCAGCAGTGAGTTTGGTGACTTGGTTCAAATTAAAAAGCAACTTATTTCTATTATAGCGCAGTGTAAGGAAAGAGGACTCGTCCACAGCGTGAAATGGGCATCTGAACTGGCATTTTCTTTGGATCCCCTTCCTCTGAATGAGATCCCTCCACCACCAGAGCTAACTGAGGAGGACGCCCAAGATTTGGATGCTCTTTGTCTGGCAAAATCATATTTTGACCTGAAGGAATATGATCGAGCTGCATATTTTCTCCGCGGCTGCCGGAGTCAGAAAGCATATTTCCTGTATATGTATTCACGCTACCTGTCAGGGGAAAAGAAGAAAGATGACGAGACAGTTGACAGCCTTGGTCCATTGGAAAAGGGTCAGGTCCGAAACGAAGCCCTGCGAGAACTTCGGGTGGAATTGAGCAAAAAACATAGCGCAGGAGAGCTGGATGGATTTGCGCTTTATCTTTATGGGGTTGTTCTTCGGAAACTGGATTTGCTGAAGGAGGCAGTAGAGATCTTTGTCGCTGCGACACACGCTCTCCCTCTGCACTGGGGATCATGGCTGGAGCTCTGCAATCTCATCACCAACATTGAAATGCTGAAGTCCCTGTCTCTGCCAGACTGCTGGGTGAGGGATTTCTTCATGGCACACATGTACACTGAACTGCAGATGATCAAAGAGGCGCTGCAGAAATATCAGAGCCTTATGGAAGCAGGATTTGCCAAGAGCACCTACATCATCTCCCAGATCGCCGTGGCTTACCATAACATACGAGATATTGATCAAGCCTTATATCTGTTTAATGAACTCCGGGAACAGGATCCTTTTCGCATCGAAAACATGGACACCTTCTCCAACTTGCTTTATGTCAGGAGCATGAAGCCGGAGCTCAGTTATCTGGCCCATAATCTGGTGGAGATAGATAAGTACAGAGTGGAAACATGCTGTGTCATAGGTAACTACTACAGTCTGCGGTCTCAGCATGAGAAAGCCGCCTTGTATTTTCAGCGTGCTCTGAAGCTGAATCCACGCTGTCTGGGGGCCTGGACCCTCATGGGTCATGAGTACATGGAGATGAAAAACACATCCGCTGCCATTCAGGCCTACAGACATGCAATTGAAGTAAACAAAAGGGACTACCGGGCCTGGTACGGACTCGGACAGACCTACGAGATCCTCAAAATGCCTTTCTACTCGCTCTACTACTACAGGAAGGCCCATCAACTCAGGCCTAATGACTCGCGGATGCTCGTAGCTCTTGGTGAATGTTACGAGAAACTGTCTCAGCAAGTTGAGGCCAAAAAGTGTTACTGGAGGGCTTATTCTGTTGGGGATGTGGAGAGAATGGCTCTTCTAAAGCTGGCAAAGCTTCACGAGCAACTGAATGAATCTGACGATGCTGCACAGTGCTACATAATCTACATCCAGGATATTTTCTCATGTGGTGAGCAGCTGGAGCATGCTGAGGTGAGCACTGCTCTGCGTTATCTAGGCCAGTACTACTTCAAGAACAAACTTTACGATGAGGCGTCTCTCTGCGCTCAGCGCTGCTGCGACTATAATGACGCTCGCGAGGAAGGCAAGGCTTTGTTAAGGCAAATCTCTGCGGTGCGGGAGCAAGGAGAGCCTTCATCTACAGACTTGTCTTTACCCTGCGTCTTCAACCCTCTGTCCAACAACACCACACCAGTCAGGAGGGTATCGCCACTCGATCTGTCGTCTGTTACACCCTAACACATTTGGGTCGGTTTTTCCACTTAGACAGAAACTTTAAATTTTGATGCCGAGTAACAGCAGTTCATATCTTTACTTACACATATGCCTCATTGTAAATAAGTGCTTGTACAGACAAAGGTGGTGTGTTAA

Function

symbol description
cdc23 Predicted to be involved in cell division; cellular protein metabolic process; and regulation of mitotic sister chromatid separation. Predicted to act upstream of or within regulation of mitotic metaphase/anaphase transition. Predicted to be part of anaphase-promoting complex. Predicted to be active in cytoplasm. Orthologous to human CDC23 (cell division cycle 23).

GO:

id name namespace
GO:0007049 cell cycle biological_process

KEGG:

id description
K03355 APC8, CDC23; anaphase-promoting complex subunit 8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_04956324_04970782.mRNA True 2051 mRNA 0.47 16 4956145 4970914

Neighbor

gene id symbol gene type direction distance location
CI01000040_04938039_04944194 WDR55 coding upstream 11754 4935989 ~ 4944391 (+)
CI01000040_04931322_04935827 NA coding upstream 20248 4931192 ~ 4935897 (+)
CI01000040_04868857_04925336 NA coding upstream 30313 4868857 ~ 4925832 (+)
CI01000040_04539382_04571810 TRPC5 coding upstream 384179 4538950 ~ 4571966 (+)
CI01000040_04503393_04506409 HMGB3B coding upstream 449736 4501723 ~ 4506409 (+)
CI01000040_05011735_05014939 NA coding downstream 40821 5011735 ~ 5015325 (+)
CI01000040_05033284_05043565 NA coding downstream 62285 5033199 ~ 5043565 (+)
CI01000040_05047319_05069572 NA coding downstream 76257 5047171 ~ 5069685 (+)
CI01000040_05088429_05089430 NA coding downstream 115335 5086249 ~ 5090404 (+)
CI01000040_05104703_05110165 KDELC2 coding downstream 133650 5104564 ~ 5111098 (+)
G186695 NA non-coding upstream 10083 4921581 ~ 4946062 (+)
G186632 NA non-coding upstream 263722 4691360 ~ 4692423 (+)
G186601 NA non-coding upstream 285554 4667662 ~ 4670591 (+)
G186026 NA non-coding upstream 378680 4573811 ~ 4577465 (+)
G186128 NA non-coding upstream 545939 4409919 ~ 4410206 (+)
G186741 NA non-coding downstream 5485 4976399 ~ 4976882 (+)
G186689 NA non-coding downstream 7712 4978626 ~ 4996279 (+)
G186696 NA non-coding downstream 44734 5015648 ~ 5016015 (+)
G186760 NA non-coding downstream 74136 5045050 ~ 5045585 (+)
G186762 NA non-coding downstream 99300 5070214 ~ 5070416 (+)
G185947 NA other upstream 982022 3973765 ~ 3974123 (+)
G185884 NA other upstream 1216864 3738987 ~ 3739281 (+)
G185296 NA other upstream 1622162 3333578 ~ 3333983 (+)
G184003 NA other upstream 3719656 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 3977982 977184 ~ 978163 (+)
G187510 NA other downstream 998131 5969045 ~ 5971732 (+)
G188149 NA other downstream 1837777 6808691 ~ 6809130 (+)
CI01000040_06833701_06848731 NA other downstream 1867210 6832987 ~ 6849135 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011155 cdc23,LOC107692994,LOC106603039 coding CM030133.1 CM030133.1 12551208 ~ 12556643 (-)