CI01000040_04539382_04571810 (TRPC5)


Basic Information

Item Value
gene id CI01000040_04539382_04571810
gene name TRPC5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 4538950 ~ 4571966 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_04539382_04571810.mRNA
GCATAAAGGGTTAGTGCTTTCAAACACCTACTGTACTTCAACAACTTTGTGAATTCGGTTTTCCAAATTAAATTGAAAAAATCACCATATCTTTGTTGGTTAATAGCTGTTGCTGTGAATACATAAAACCATACCTCATATTATGGATAGTTCACCCAAAAATTAAAGAATGAATATTCTGACATCATTTACTTACCATCATGTTGGAAGTCAGTAGTCAGGTAGGTATTTATGGTAAAAATGGTTAATAATCACTCTGACAAATATTTACTGGAGTAAAAAGTGTCTTGCCATCTAGACTTGTTCTTATTTAGCATATCAGTTATAAAATTAATTTGCAAACTTGAAATGACTAACTAACTGTTTGCTCAATCTCTGCTCAGATTTCTCTGGACTTGTGTCATCTTATGTCACTGAGTCCACATAAACCCCATGGCGCAGCTGTACTACAACAAGGCCAGTAACTCCCCGTACCGCGATCGCATCCCCCTGCAAATTGTGAGGGCGGAGGTTGAGCTGTCTGCCAAGGAACGAGCCTACCTGACGGCGGTGGAGAAGGGCGACTATGCTGGAGTTAAACTGGCCCTTGAGGAGGCCGAAATCTATTACAACATCAATGTGAACTGCCTGGACCCGTTGGGCCGCAGCGCACTCCTCATCGCTATTGAGAATGAGAACCTGGAGGTGATGGAGCTGCTGTTGAGTCATGGTGTGCTCATGGGCGACGCTCTTCTCTACGCCATCCGCAAGGAAGTGGTGGGAGCAGTGGAGTTACTGCTGTCCTACAGGAAGCCCAGTGGCGAGAAACAGGTTCCTTCTCTAATGATGGATACACAGTTTTCAGAGTTTACACCTGATATCACACCAATCATGCTGGCTGCCCACACTAACAACTATGAGATAATCAAGCTCCTAGTTCAACGAAAAGTCACCATACCGCGGCCACACCAGATCCGTTGTGACTGCGTGGAATGTGTATCCAGCTCCGAAGTGGACAGCCTGCGGCACTCCCGTTCACGCCTGAACATCTACAAAACTCTTGCCAGCCCCTCTCTCATCGCCCTTTCCAGCGAAGATCCCATCCTCACAGCGTTCAGGCTGGGCTGGGAGCTGAAGGAGCTCAGTAAGGTGGAGAATGAGTTCCGGCAGGAGTATGAGGAGCTATCGCAGCAGTGCAAGCTTTTCGCTAAAGACCTGCTGGATCAGGCCCGTAGCTCCCGTGAGCTGGAGACCATCCTCAACCATCGGGATGACCACAGCGAGGAGCTGGATCCCCGTGAATGCAGAGACCTGGCCAAGCTCAAGCTAGCCATCAAATACCACCAAAAAGAGTTTGTAGCTCAGCCCAACTGCCAGCAGCTCCTGGCAACACTGTGGTATGATGGCTTCCCGGGTTGGAGACGTCGTCACTGGGCAGTGAAGCTCGTCACTTGCTTCATCATTGGCCTGCTCTTCCCTGTCTTCTCCCTCATATACCTTCTGGCTCCAAAAAGCACTCTGGGAACCTTCATCAAGAAACCGTTCATCAAGTTCATCTGCCACACTGCCTCTTACCTGACCTTCCTCTTGCTCCTCCTCCTCGCCTCACAGCATATCGTGCAAACGGACCTGCATGTACAGGGACCTCCACCCACCATTGTGGAGTGGCTGATCTTACCCTGGGTTCTAGAGATTAAAGAGATGTGGGATGGAGGTTTCACAGAATACATCCATGACTGGTGGAACCTGATGGATTTTGCGATGAACTCCCTCTACCTGGCCACCATATCTCTTAAAATGGTGGCCTACTTTAAGTACAATAGCTCTCGTCCTCGTGTGGAGTGGGAGATGTGGCACCCTACGCTCATCGCAGAGGCTCTCTTCGCTATCGCCAACATCTTCAGCTCGCTGCGTCTCATCTCTCTGTTCACTGCCAACTCTCACTTGGGCCCACTGCAGATTTCTCTCGGCCGCATGCTGTTGGACATCCTCAAGTTCCTTTTCATCTACTGTCTGGTGCTGCTGGCTTTTGCCAACGGCCTCAACCAGCTCTACTTCTACTATGAGACGAAGGCGTCCGAAGAGCCCAACCACTGCAAAGGGATCCGTTGTGAGAAGCAGAACAATGCCTTCTCCACGCTGTTTGAAACTCTTCAGTCTCTTTTCTGGTCTGTGTTCGGGCTGTTGAATCTGTACGTTACCAATGTGAAGGCTCGTCATGAGTTCACCGAGTTTGTAGGGGCCACCATGTTCGGCACTTACAACGTCATCTCACTGGTGGTGCTACTGAACATGCTCATCGCTATGATGAACAATTCTTACCAGCTTATCGCTGATCACGCGGACATTGAGTGGAAGTTTGCTCGTACAAAGCTGTGGATGAGCTACTTTGATGAGGGAGGGACGTTACCACCACCCTTCAACATCATACCTAGTCCAAAGTCTGTGTGGTACCTGTGTGTGTGGCTGCACTGCCGTCTGTGTGGACACGGAGAGCCAAGGCAAGAGTGTAAACATGGAAACCTCAAAGAGTTCACGGAAAGGCATGCCGATAACCTCATTCAGAACCAGCACTACCAGGAGGTGATCAGAAACTTGGTAAAGCGATATGTTGCAGCCATGATCCGCAGCGCCAAAACAGATGAAGGGCTGACAGAGGAGAACTTCAAGGAACTGAAGCAGGACATCTCCAGTTTCCGCTATGAGGTTCTTGACCTGCTGGGCAACCGAAAACCTCCACGCCGCACATACTCTTCCAGTAGTGAGGCCACTCAGCAGGACGAAACAGCTGAGCCTGAGGAAGATGAGGAGGCAGATGGGCTTGGAGGACACCGATGTGGGGATGGGGGAGAGTCATCCAGATCCAAAGCATCTACATCTTTTTCCCAATGTTACAGGAGTAACCGAGAGTCCCAATTCAGCGTATCAGCCCTGTTCAAGTCCATGTCGGGACCGGCCAGAGAAAGACTGGAGAGCAATGGCCTGAGGAAGAACATATCCCACCCCTCTGCATTTGTGCGGACCAGCAGCCGCATGCTGCACTTTTCGCGCTCCAAGAAAAACTCTTTGCAACGTTTGGGAATGCTGATGTCGCGCATGAATGGACACGTCCCGGATCCGCATGCGGAGACCCCGGGAGTTCAGCGGTCTCCATACAGCGTCTCAGACAGGGTACCGCAAACATCTTGGCAGGACCCCCAGATGGTGTCGAAGGTAACACAGAGCGAGATGCACCTGCACACGCTGGGATTGGGACCCTCTGAGACTGAACATAACCCAATGCAGGCCACATCTCAACGGGCGAATGGCAAGGACAATCTCCTCCTCCGGCCGCCCAGCCACTCGCTGCCCCCGCTGCACTGTGCTTCCAGATTGACCGCCTCCAGCGCCCAGCTCTTGGCCTCCAGTGATGACCTGTGCCATGGCTGGATGGGACCCTGTGACATTTTAGGCTCCTCCAGCTGGGAACAAGAGGAGTCTGTTACGACACAGCTGTAGTGGCAGAAGCAAAATCAGCTCACTTTGACAGCTTTTCACAGCTTAAGGCGATTGGTTTAAAAGGTTTGATACTAGTGAAGGGCCTGTAATAATTTAGCATCTTTACGCTTTGCACACATTGGAGCTTATTCACTAAACACGAGCAAGACAAATTGT

Function

symbol description
trpc5 Enables calcium channel activity. Predicted to be involved in several processes, including metal ion transport; phosphatidylserine exposure on apoptotic cell surface; and regulation of cytosolic calcium ion concentration. Part of calcium channel complex. Biomarker of dilated cardiomyopathy 1H.

GO: NA

KEGG:

id description
K04968 TRPC5; transient receptor potential cation channel subfamily C member 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_04539382_04571810.mRNA True 3633 mRNA 0.50 10 4538950 4571966

Neighbor

gene id symbol gene type direction distance location
CI01000040_04503393_04506409 HMGB3B coding upstream 32541 4501723 ~ 4506409 (+)
CI01000040_04475476_04499896 NA coding upstream 38837 4475312 ~ 4500113 (+)
CI01000040_04442810_04474877 MAP4K6 coding upstream 63826 4441797 ~ 4475124 (+)
CI01000040_04369595_04374831 NA coding upstream 163595 4368465 ~ 4375355 (+)
CI01000040_04063098_04068134 PPP2R2B coding upstream 470752 4062947 ~ 4068198 (+)
CI01000040_04868857_04925336 NA coding downstream 296891 4868857 ~ 4925832 (+)
CI01000040_04931322_04935827 NA coding downstream 359226 4931192 ~ 4935897 (+)
CI01000040_04938039_04944194 WDR55 coding downstream 364023 4935989 ~ 4944391 (+)
CI01000040_04956324_04970782 CDC23.L, CDC23 coding downstream 384179 4956145 ~ 4970914 (+)
CI01000040_05011735_05014939 NA coding downstream 439769 5011735 ~ 5015325 (+)
G186128 NA non-coding upstream 128744 4409919 ~ 4410206 (+)
G186040 NA non-coding upstream 281660 4254987 ~ 4257290 (+)
G186064 NA non-coding upstream 286619 4252042 ~ 4252331 (+)
G186057 NA non-coding upstream 298671 4240066 ~ 4240279 (+)
G186041 NA non-coding upstream 312460 4214116 ~ 4226490 (+)
G186026 NA non-coding downstream 1845 4573811 ~ 4577465 (+)
G186601 NA non-coding downstream 95696 4667662 ~ 4670591 (+)
G186632 NA non-coding downstream 119394 4691360 ~ 4692423 (+)
G186695 NA non-coding downstream 349615 4921581 ~ 4946062 (+)
G186741 NA non-coding downstream 404433 4976399 ~ 4976882 (+)
G185947 NA other upstream 564827 3973765 ~ 3974123 (+)
G185884 NA other upstream 799669 3738987 ~ 3739281 (+)
G185296 NA other upstream 1204967 3333578 ~ 3333983 (+)
G184003 NA other upstream 3302461 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 3560787 977184 ~ 978163 (+)
G187510 NA other downstream 1397079 5969045 ~ 5971732 (+)
G188149 NA other downstream 2236725 6808691 ~ 6809130 (+)
CI01000040_06833701_06848731 NA other downstream 2266158 6832987 ~ 6849135 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019062 trpc5b coding NC_007132.7 CM002905.2 34132747 ~ 34211658 (+)