CI01000046_04125918_04128585 (CCDC97)


Basic Information

Item Value
gene id CI01000046_04125918_04128585
gene name CCDC97
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4125887 ~ 4128585 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_04125918_04128585.mRNA
ATGTGGGGAGAAATCGAGCCATGTATCAAACCCAAGGAGGATGAAAACATGAAGAGCTGCGGTACAAACTCTCCAGATTTGCAGCAGAAGACAGCGTTGTGGGGAGAAATCGAGCCATGCACTGAACCTAACACATCTGGCAACTGCAACATACCTGCTCCTCAAGAGAGAAGTCCTCCTAAAACAAATGTCAATGAGGCCCAAAACACTACAAGCTACTCTCCAAATCTACAGGATGAGCCATCCAGCTGTCTCAGCGCAATGATCGAGGCTGTAGCAGCCAGTGGGAGTCCAGTGAAAAGCCAGCAGCTGGGGGAGCCAGACTTAACTCTGGAGGAGAAGAAGAAGGTTTTAATGGATCAGTACAAATCCAAGCCCTTGGTTTTTCTAGAGCGCTATCAGGCCCATCTGAAGCCAGAGCACATGGACGCTTTCTCACACCTGAGCAGTGACTGCAGGGCGCAGTATTACTGCAAGGAGATTCAGAGACGGGCATCTGGCACAGCAGACCGGAAACGGATCCGTAACCATCGATACGCAGCTCTCCGTGCTCTTCAGAAGGAGGGCCAGTACTTCAGCGAGGAGCAGATGCGTGTGCGAGATCCACTGCTGTATGAGCAGTACATTGGACAGTATCTCAGTGAAGAGGAGATCCTGCAGCGCTCAGAGGAGGCCATGAAGAACGGCCCGGGGGGACTCGCTGACCTGCTTATCAACTCCTACCAGGAGAAACTCATCCAGAACCGCCTGGAGGAGGAGCAGGAGAGAGAGCAGTGTGCAGTGGAGGAGTCTGACGAGGAAGAGTGTGAGGAACCCAGACAGGCGGAGTGGGAGCCCACTGCAGAAGAGAAAGCCCTGCTGAGGGAGGAGTTCCTGAGTCAAATGCATCAGCGCTTCTTGGATGGCAAAGATGACTTCAACTACAGGTCAAATCACAGTGCTTACTCATTCTCCAGTTTTAATATCATATAGGTCTAATTTAATATCAAACTCTGAGAATAAA

Function

symbol description
ccdc97 Orthologous to human CCDC97 (coiled-coil domain containing 97).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_04125918_04128585.mRNA True 1003 mRNA 0.51 5 4125887 4128585

Neighbor

gene id symbol gene type direction distance location
CI01000046_04021483_04023514 GFER coding downstream 102373 4020458 ~ 4023514 (-)
CI01000046_04013708_04017841 SYNGR3, SYNGR3A coding downstream 108046 4011908 ~ 4017841 (-)
CI01000046_03967726_03970443 NA coding downstream 155174 3967457 ~ 3970713 (-)
CI01000046_03951775_03952660 BUD31, BUD31.L, BRAFLDRAFT_113775 coding downstream 172844 3951181 ~ 3953043 (-)
CI01000046_03946243_03948935 CPSF4 coding downstream 176343 3946230 ~ 3949544 (-)
CI01000046_04136250_04185791 CACNA1H, CACNA1HA coding upstream 7270 4135855 ~ 4185848 (-)
CI01000046_04279865_04297801 EPN2 coding upstream 151280 4279865 ~ 4297801 (-)
CI01000046_04329752_04335164 PRPSAP2 coding upstream 200299 4328884 ~ 4335164 (-)
CI01000046_04336982_04343632 NA coding upstream 208120 4336705 ~ 4344054 (-)
CI01000046_04345411_04345806 NA coding upstream 216617 4345202 ~ 4345806 (-)
G198505 NA non-coding downstream 26267 4099160 ~ 4099620 (-)
G198487 NA non-coding downstream 44559 4080745 ~ 4081328 (-)
G198486 NA non-coding downstream 46110 4078721 ~ 4079777 (-)
G198485 NA non-coding downstream 47439 4074670 ~ 4078448 (-)
G198483 NA non-coding downstream 55194 4070093 ~ 4070693 (-)
G198515 NA non-coding upstream 114956 4243541 ~ 4244246 (-)
G198520 NA non-coding upstream 120503 4249088 ~ 4250325 (-)
G198522 NA non-coding upstream 127103 4255688 ~ 4255887 (-)
G198532 NA non-coding upstream 230214 4358799 ~ 4359095 (-)
G198533 NA non-coding upstream 231141 4359726 ~ 4359969 (-)
G198265 NA other downstream 325786 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 1258093 2866070 ~ 2867794 (-)
G196463 NA other downstream 1957243 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 3345594 774434 ~ 780293 (-)
G195098 NA other downstream 3449759 670736 ~ 676128 (-)
G199054 NA other upstream 1968774 6097359 ~ 6097674 (-)
G199014 NA other upstream 2235593 6364178 ~ 6375406 (-)
G199130 NA other upstream 2449395 6577980 ~ 6594210 (-)
G199181 NA other upstream 2698100 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025610 ccdc97 coding NC_007114.7 CM002887.2 39958407 ~ 39967412 (+)