G197702


Basic Information

Item Value
gene id G197702
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 6427844 ~ 6429635 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU224417
GTCTGAGCTGCAGTTGAGAAGATGGAAGAAAGAGAGAGAGCGAGGGATGCTTTTAGATCAGGAGGGTGTTGGCTGCAGATGAAAAGATGTTCACACAGCTCTATCACAAACTGGTGCTCGGCTCCTGATGCTGTTTACACAGCCAAAGCCATTCTATTTCAGACATGTTTGTACTGTTTTACCCGGATTGCAGGTTACTGTGTAAAGAGAGAGCTGTTATTTCAGTCAGGTGTGGTTGATCTCCACCTGTTTCCTGTTGTCAGGTCTCAAAGGAAACACAGTTGCAATTGTATCATTTTCTCACAATTTGAACTGTTTAAACATGAAAAATAATGTTGGACCATTATTACTCTATAAACAGCTAGAGTTTTAGAAGAAAATATGAATGGTGCTTGACTGTGAAAATGTTGTTGCCATGATGTTGTGAGTGGTTGCCAGGGCATTACTATGCAGTTGCTAAGGTGTTCAGAGTGTTTTTTGACAAATGCTATCTGGTTGCTATACTTCTTGGTGGTTGCCAGGGCATTACTATGCAGTTGCTAAGGTGTTCAGAGTGGGTTTCGACAAATGCTATCTTGTTTATATATTTCTGTGTGGTTGCCAGGGTGTTACTATGCAGTTGCTAAGGTGTTCAGAGTGTTTTTTGACAAATGCTATCTGGTTGCTATACTTCTTGGTGGTCGCCAGAGCATTACTATGCAGTTGCTAAGGTGTTCAGAGTGTTTTTTTTTTTCTTGACAAATGCTGCCTGGTTGCTAGGATATTCTGGATGGTTTCCAGTGTTGCTAAGGTGTTCTAGGTGTTTTAAACATCTGCTATCTGGTTGCTAAGATATTCTGGGTGGTTGTTAGGGCCCTAATTTGCTGTTATGTGGTTGCTTACTATACAGAACATTAATACTTGGCACTAAGGGTTTGTTTAATCTAATAACAATAGTGAAGCTTGCAAGCAACAGTCATAATACTAGAGAGGGGAAATAAATAAGGAGTGTATCAGTGAGTAGTAAGACCTAAAATTGATAAAAGACAGAAAACATTTAGGCTGTTAACTGAAACTGCTCTGTAATGTGGAAGTGATTGCTTCAGGCTTTAATTTAAATAGAGAAGCATATGAGCACAGCTTTTATCTCTTAGTTCTAAGTTTCTCTTTTCTCTTTCCCATCCTAATTGTGATTGACAGCTGGTGGATTAGGAGGACTGCTGGAATGTGAGGAAAGACGAGGAGAAAGTGGGAAAGAT
>TU224418
GTCTGAGCTGCAGTTGAGAAGATGGAAGAAAGAGAGAGAGCGAGGGATGCTTTTAGATCAGGAGGGTGTTGGCTGCAGATGAAAAGATGTTCACACAGCTCTATCACAAACTGGTGCTCGGCTCCTGATGCTGTTTACACAGCCAAAGCCATTCTATTTCAGACATGTTTGTACTGTTTTACCCGGATTGCAGGTTACTGTGTAAAGAGAGAGCTGTTATTTCAGTCAGGTGTGGTTGATCTCCACCTGTTTCCTGTTGTCAGGTCTCAAAGGAAACACAGTTGCAATTGTATCATTTTCTCACAATTTGAACTGTTTAAACATGAAAAATAATGTTGGACCATTATTACTCTATAAACAGCTAGAGTTTTAGAAGAAAATATGAATGGTGCTTGACTGTGAAAATGTTGTTGCCATGATGTTGTGAGTGGTTGCCAGGGCATTACTATGCAGTTGCTAAGGTGTTCAGAGTGGGTTTCGACAAATGCTATCTTGTTTATATATTTCTGGGTGGTTGCCAGGGCGTTACTATGCAGTTGCTAAGGTGTTCAGAGTGGGTTTCGACAAATGCTATCTTGTTTATATATTTCTGTGTGGTTGCCAGGGTGTTACTATGCAGTTGCTAAGGTGTTCAGAGTGTTTTTTGACAAATGCTATCTGGTTGCTATACTTCTTGGTGGTCGCCAGAGCATTACTATGCAGTTGCTAAGGTGTTCAGAGTGTTTTTTTTTTTCTTGACAAATGCTGCCTGGTTGCTAGGATATTCTGGATGGTTTCCAGTGTTGCTAAGGTGTTCTAGGTGTTTTAAACATCTGCTATCTGGTTGCTAAGATATTCTGGGTGGTTGTTAGGGCCCTAATTTGCTGTTATGTGGTTGCTTACTATACAGAACATTAATACTTGGCACTAAGGGTTTGTTTAATCTAATAACAATAGTGAAGCTTGCAAGCAACAGTCATAATACTAGAGAGGGGAAATAAATAAGGAGTGTATCAGTGAGTAGTAAGACCTAAAATTGATAAAAGACAGAAAACATTTAGGCTGTTAACTGAAACTGCTCTGTAATGTGGAAGTGATTGCTTCAGGCTTTAATTTAAATAGAGAAGCATATGAGCACAGCTTTTATCTCTTAGTTCTAAGTTTCTCTTTTCTCTTTCCCATCCTAATTGTGATTGACAGCTGGTGGATTAGGAGGACTGCTGGAATGTGAGGAAAGACGAGGAGAAAGTGGGAAAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224417 False 1238 lncRNA 0.40 2 6427844 6429635
TU224418 True 1238 lncRNA 0.40 3 6427844 6429635

Neighbor

gene id symbol gene type direction distance location
CI01000046_06362326_06364947 NA coding upstream 62760 6361790 ~ 6371457 (+)
CI01000046_06330849_06347081 CRLF3 coding upstream 80465 6330849 ~ 6347379 (+)
CI01000046_06202182_06214539 TRAF7.S, TRAF7 coding upstream 213284 6202182 ~ 6214560 (+)
CI01000046_06179800_06180706 NA coding upstream 246927 6179194 ~ 6180917 (+)
CI01000046_06168140_06169381 RPUSD1 coding upstream 258340 6167812 ~ 6169504 (+)
CI01000046_06465424_06470835 SCPEP1 coding downstream 35789 6465424 ~ 6470994 (+)
CI01000046_06489840_06506540 TUBG1, TUBG1.L, TUBG2 coding downstream 59985 6489620 ~ 6507607 (+)
CI01000046_06553680_06556870 NA coding downstream 122691 6552326 ~ 6557725 (+)
CI01000046_06586111_06594100 CNTNAP1 coding downstream 156476 6586111 ~ 6594182 (+)
CI01000046_06605188_06611590 SLC16A6B coding downstream 175553 6605188 ~ 6611714 (+)
G197684 NA non-coding upstream 8062 6385052 ~ 6419782 (+)
G197683 NA non-coding upstream 43286 6384237 ~ 6384558 (+)
G197680 NA non-coding upstream 46376 6381161 ~ 6381468 (+)
G197676 NA non-coding upstream 99542 6327959 ~ 6328302 (+)
G197717 NA non-coding downstream 38866 6468501 ~ 6468883 (+)
G197719 NA non-coding downstream 46667 6476302 ~ 6476711 (+)
G197718 NA non-coding downstream 49313 6478948 ~ 6479333 (+)
G197721 NA non-coding downstream 52471 6482106 ~ 6482998 (+)
G197822 NA non-coding downstream 139965 6569600 ~ 6569867 (+)
G197528 NA other upstream 685160 5726121 ~ 5742684 (+)
G197352 NA other upstream 1151391 5259318 ~ 5276453 (+)
G196869 NA other upstream 2006157 4415530 ~ 4421687 (+)
G197121 NA other upstream 2056414 4371011 ~ 4371430 (+)
G197055 NA other upstream 2278064 4149423 ~ 4149780 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 390303 6808507 ~ 6821543 (+)

Expression


Co-expression Network