Gene
RNA
| Item | Value |
|---|---|
| gene id | G214170 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000050 |
| NCBI id | null |
| chromosome length | 7556436 |
| location | 2928564 ~ 2930333 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU242966 | True | 323 | lncRNA | 0.50 | 3 | 2928564 | 2930333 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000050_02785728_02797909 | PHYHIP | coding | downstream | 130655 | 2785556 ~ 2797909 (-) |
| CI01000050_02752537_02755836 | COX5B.1, COX5B1, COX5B | coding | downstream | 172728 | 2752032 ~ 2755922 (-) |
| CI01000050_02528520_02596972 | TCF7L1B, TCF7L1, TCF7L1A | coding | downstream | 331592 | 2528520 ~ 2596972 (-) |
| CI01000050_02503125_02509915 | NA | coding | downstream | 418526 | 2502592 ~ 2510038 (-) |
| CI01000050_02488032_02496421 | STAMBPB | coding | downstream | 431309 | 2487711 ~ 2497255 (-) |
| CI01000050_02945824_02971282 | GNA14, GNA14A | coding | upstream | 14588 | 2944921 ~ 2971369 (-) |
| CI01000050_03142876_03156191 | KLHL22 | coding | upstream | 212478 | 3142811 ~ 3158564 (-) |
| CI01000050_03362364_03363241 | NA | coding | upstream | 431951 | 3362284 ~ 3364257 (-) |
| CI01000050_03491159_03514757 | NA | coding | upstream | 560755 | 3491088 ~ 3514757 (-) |
| CI01000050_03635030_03637939 | NA | coding | upstream | 704240 | 3634573 ~ 3639160 (-) |
| G214141 | NA | non-coding | downstream | 57401 | 2870832 ~ 2871163 (-) |
| G214138 | NA | non-coding | downstream | 69202 | 2858658 ~ 2859362 (-) |
| G214124 | NA | non-coding | downstream | 91292 | 2835716 ~ 2837272 (-) |
| G214123 | NA | non-coding | downstream | 94655 | 2832695 ~ 2833909 (-) |
| G214113 | NA | non-coding | downstream | 119826 | 2808537 ~ 2808738 (-) |
| G214185 | NA | non-coding | upstream | 46876 | 2977209 ~ 2977482 (-) |
| G214193 | NA | non-coding | upstream | 63582 | 2993915 ~ 2994180 (-) |
| G214194 | NA | non-coding | upstream | 64406 | 2994739 ~ 2995196 (-) |
| G214219 | NA | non-coding | upstream | 78139 | 3008472 ~ 3008895 (-) |
| G214212 | NA | non-coding | upstream | 179285 | 3109618 ~ 3111522 (-) |
| G214027 | NA | other | downstream | 355662 | 2557166 ~ 2572902 (-) |
| G214017 | NA | other | downstream | 463866 | 2462176 ~ 2464698 (-) |
| G213948 | NA | other | downstream | 597248 | 2328513 ~ 2331316 (-) |
| CI01000050_02230904_02233429 | NA | other | downstream | 687675 | 2228865 ~ 2233429 (-) |
| G213704 | NA | other | downstream | 1611458 | 1312983 ~ 1317106 (-) |
| G214314 | NA | other | upstream | 483115 | 3413448 ~ 3424257 (-) |
| G214436 | NA | other | upstream | 595483 | 3525816 ~ 3589057 (-) |
| CI01000050_04564233_04580815 | KANSL3 | other | upstream | 1633354 | 4563687 ~ 4581278 (-) |
| G215935 | NA | other | upstream | 2118583 | 5048916 ~ 5073109 (-) |
