AMCG00001334


Basic Information

Item Value
gene id AMCG00001334
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25552444 ~ 25581376 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001334
ATGAGGAGAAGCAATGCGTTTGATTCAATGTGCAGCCTGCCACAAGTCTTTCCTTTTGAGAATCGGCTTCCTCCGACTGTTTTCAATGGATTTCATCTGTCTGCTGCGGAAcagctggagctggaggagagaAATGGTGTTCTCCCCCTGCACTCACGCACTTATTCTTTAATAACCTGTTTCCTTTGCTTCCTTGCAGCTCCCAGACCCCTGTACCGAGAGGAGACCATTGTCATCGCCCTGGCGTCTGTCTCTGTAGTGGCAGTCCTCATCGTCGCACTTTTCTTTGGGTACAGGATGCTCACAGGAGACCGCAAACAAGGACTCCACAACATGGACATGATGGAAGCAGCCGCCTCGGAGCCCTCCCTCGACCTGGACAGCCTCAAACTGCTGGAGCTGATCGGGCGTGGCCGGTACGGCTCGGTGTACAAGGGCTGCCTGGATGAGCGCCCGGTGGCCGTCAAGGTCTTCAACTACACCAACCGGCAGAACTTCGTCAACGAGAGGAACATCTACCGCCTGCCCCTCATGGAGCACGACAACATCGCCCACTTCACCGTGGGGGACGAGCGGCTGACCTCTGATGGCCGCATGGAGTACCTGCTGACCTGGGGATATAGCTCGTACTCCCAGCCCTGGTTGGGAGCTGGTGTGGATCACGGGGGCCGAGCTGCGTCCCTGATCGCAGACAGTTTGTTTGACGCAGCTGTTGTGTTGGTTTTCCAGGGGTCCCTGTGCCGCTACCTCAGCCTGCAGTCCGGAGAGTGGGTGAGCTCCTGCCGCCTGGCGCACTCCGTCACCAGAGGACTGGCGTACCTGCACACCGAGCTGCTCAAAGGAGATCACTACAAGCCGGCCGTGTCTCATCGGGATCTGAACAGCCGCAACGTGCTGGTGAAGAACGACGGGACGTGCGTCATCAGCGACTTCGGCCTGTCCATGAAGTTGACGGGCAATAGGCTGGTGCGGCCAGGGGAGGAGGACAATGCTGCCATCAGTGAGGTGGGAACCATTCGCTACATGGCCCCTGAGGTGCTGGAGGGGGCGGTGAACCTGCGGGACTGCGAATCAGCCCTGAAGCAGGTGGACATGTACGCCCTGGGCCTCATCTACTGGGAGATCTTCATGAGGTGCACTGACCTCTTCCCAGGAGAGTCGGTGCCAGACTACCAGATGGCCTTCCAAGCCGAGGCGGGGAATCATCCCACCTTCGAGGACATGCAGGTGTTGGTGTCCCGGGAGAAACAGCGGCCTAAATTCCCAGAAGCCTGGAAAGAAAACAGCCTGGCGGTGCGCTCTCTGAAGGAGACCATGGAGGACTGTTGGGACCAGGATGCCGAGGCCAGGCTGACGGCTCAGTGCGCAGAGGAGAGGATGGCCGAGCTCATGGTCATCTGGGACCGCAACAAGTCTGTCAGCCCCACTGTCAACCCCATGTCCACGGCCATGCAGAACGAGAGGAACCTCTCGCACAGCCGCCGGGTGCCAAAAATCGGGCCATACCCCGACTATTCCTCTTCCTCCTACATCGAAGACCACGAGGGCATCGTCAAGAACATCTCCAGCGAGCTGTCAACTTCGGGCACGCCCTCTGTGGCAGGGGGGGGAAGCAGTGGTGGGGGTGAGAAGAACCGCAACTCCATCAACTATGAGCGGCAGCAGGCCCAGGCGCGCCTGCCCAGCCCAGAGACCAGTGTGACCAGCCTGTCCACTACTACCACAACCACCGCCGGCCTCACGCCCAACACAGTCATGACCACCATCTCAGAGTCGGGCTACCCCGACGACACAGGTCTGCTGCAGCCAGCGGGGCCTGCGCAGGTGTGCCTGCAGCTGACAGAGGAGGACCTGGAGACCACCAAGCTGGACCCCAAGGAGGTGGACAAGAACCTGAAGGAGAGCTCTGACGAGAACCTGATGGAGCACAGCATGAAACAGTTCAGCGGCCCAGACCCCCTCAGCACCAGCAGCTCCAGCCTGCTGTACCCGCTTATCAAGCTGGCAGCTGAGGTCACAGGGCAGCCCGACTTCGGCCAGGCCAGCGGCTCCTCAGGCGGCGGGGAGGTGCCGCCCATGTTCCCCCTGCCCAAGCAGCAGAACCTGCCCAAGAGGCCCACCAGCCTGCCACTCAACACCAAAAACCCCACGAACAAGGAGTCGCGGCTGAAATTCGGCAGCAAGCACAAGTCCAACCTGAAGCAGGTGGAGACCGGAGTGGCCAAAATGAACACCATTAATGCGGCTGAGCCCCACGTGGTGACAGTGACTAACAACGGGCAGAGCCGCGGGGGCCTGGCCAACGGCCATGCCGGCTCGTCTTCCTCGGCACAGCTGCAGTACGCCAGCGGCTCGGCGGCCGCGGCCGCCCCGGCTCACAGCTCGGCACTGCTGCAGGCGCAGTTCAGTGGGGAGGACAGCCGGCTCAACATCAACTCCAGCCCTGACGAGCACGAGCCCCTCCTGCGGCGCGAGCAGCAGGTCGGCCGGGAGGAGCGTCTGATGGAGCGCCTGGCGGACAGGAGGGACCACCGCGGCCTGGAGGCCGTCCGCACCAactccaacaacaacaacagcaacccCTGTCCCCCCACCGAGTGCCCCGCCGCCCCCGAGCCCCCCGCCGACACGCAGCTGCGGCAGCCCAAGCCCCGCAGAGCCGAGAGGCCCAACTCCCTGGACCTGTCCTGCGCCAGCACTGTGGACTGCACCATGCAGAGTGAATCGAGGGATGGCAAGGCGGGCTCTGGCGAGAAGATCAAGAAGCGTGTGAAGACACCCTACTCTCTGAAGAGGTGGCGCCCGTCCACCTGGGTGATCTCCACAGAGCCGGTGGACAGCGAGGTCAACAACAACAGCCAGCAGGCGGCCAGCCGCTCCAAATCCAGCACTGCCGTCTACCTGGTGGGCGGGGGCACAGCCACAGCAACCGTTCCCACGGATAACGGAATGACTTGCCTGTGAACTGTTGGCATTTGTTTCCCTTTCCACATTTCAATGtcacttgagaaaaaaaaaaaaagaaaaaaacgacaagaaaaaaaaattcaagcagcttaACTTTCCGCTCACTTATCCTTCAAAGAATTGCTTTAAATAGAATCCAGCTATGCAGCAAAATTGGCTTACAGATGCTTccattttggttgttttcctCCATTTCCACATTGTATGTTTGCTTGAAaggctgttttgttgttttttttttttgcactttttgtttttaatcatcttAATGGCACAGTCTGTCTCGTGTGACCacctgaaagaaagaaaaaaatatatagaaagtgGTCTTAAATGCTAAGCAGGAACGATAAAAGATGACAATGCATTGAATTACAATCAACAGACCAGTTTTATAATGTATCCATATATAAAatggtcttaaaaaaaaagagtggtCTTTAAGACAGGGTTGACTGCAATGactttgtttcactttttttgttaaatgtatgcaaaagtAGATTTCTATGTTCATGTATTCACGCGTGTAATATCTTTGTAttccttgtttttgtattatgttttgaaatgtgcaaTAGGCTTTAGCTTTGCAGTGCTTTcgtttcaatgtgtttttcgATATGTTTTTGCGGCAGTTTCTTAAGCAGTGCACTTACTTACAGTGGCAATCCTGCATCTGTCCAGTTCCCTTGGCTTGGGCCCTCCGTTCTGGCTTCCTGACAGGACACCGCGGCACTGAAGACAATCCTTTGCTTTCTCACAGAGTGGTTGAAAAACctgaggagggaaaaaaaaacacaacaaacaaaaaataaccgTGGGGGTTATTGTAACTTCTCTCCTTTTGAGTAACACCAAGCTGTGTTACTGGAGTCTGACAGAAGAAAATGAGAACAGCAACCAACCAAACTTAAATCATTCTGCTCGCAGTCGGGACGTTTAAGGTGCCGAAACAAACTGCGGCAGCTTGAAACTGCGTGTCTGCGAGACTGAATGTGACTTGTCTGCTTCAGTAATGTTGTGAAAGTGTTGACTCCTTTCCCATCTCTCTATGCAACTGAAACCCTAATGCTTGGAACATCAGCCTGATTGCCGTGTTTGTGCGCTCGTCTGCCAAGCCTGACTGGTTTTCTTCTTCACAACAAGCTGGtgcttttttcatgttttcgTGCATTCAGTTTTTTCCCCGTGTTCTCGGTATCGGAGGTTTGGCGACCAGTTGTTGGACTGTCCTTGAGGTTTTCCCTGAACGGCCATTAAAGGATGAAGGAGACTACCGACCTGTCAATCAGAACTCTAAACCATACAATGCAAGCTCTTAAAAACCCCACCCCCACAGTCTTTAGTTCTttcctggtttttgtttttctctgtaaaacatttttgtgttgtggTAATCGCTACAGAGGGAAGACAAAGACGCATTGTAAATCATCTTTTCTGGAATCTCAGCGACCATCTAAAAACTTCTGTCCTGTCAGTTTTGTTCTCCCTACTGTTTGTGTAACGTACCTAAGCTATGATTCTCCAACGTTGCCAGAAGGAGGTGGTTTCGAAACAATATTTTTGAGAGCCAAACTTTTAATTTtgatctttttaaaaaatattagtaGTATTTACAGTACACTACTCCTACAATGCATCTAACGTGTctcatattttattgtgtgtgataAGGCTATTACagcttaaaattatattatgtgCTGCGTTTGTATTGCATTCATTGGACTTGGCAGTTTTAGGTTTGCCATTTATCTTGGCGAATTTGAGCAGTTCTCTGATTTTGATTCTAAAATTCCACATATGCATCCTATTTAATGGGATGTAAGGCAAAaaagtggaaataaaatatcactgtccAAATTCCAATGTTTTAATCAGCCTGAAATGTTCCTTTTTCCCTGAATGATCCCTTCATTCAGTAGATTGTTTTCCCTGACACTCCTCTCTCCCAGTGAGTTAATGCGTCACTATTTTAGACTGTGTACTGCACTTCCTCACTATGCTAGATTAAGGAGCTGGGAGATCCCAGTTAGATACCTTGTTCAAccaaaaagcacatgtacagttAATACACATTTCCTTGGTTTAATTAGCAGTTACACAATTAGTGTAGATAAGCTTGTATATAATACAGTTGTGTTCtataatgcatatttatgcTTTTCCTGCAGTGGGCACATTGATTGGTTGGGGTCGTCTATGGCAGATTGCAGAAAGacttgcatgtatgtgtgtgttcgtgtgttacacacacacacatctagtGAACCCTTGAATTTAATAAGAATGATCAAAGCCCCCCCCCCATATTAGCAACATATTTTAAGAGCCAGGCTACAGTTTACTTAAGTTAGTATGGCATAAAGATTATATTAACTCCTCAACACTTGTAATGATTTGGTTTCTTATAGATGGAGAACTGATGAGTACATTACTCACACACCTTCAAGATCTAAcactcaaaatacattttaaataatattattgttaatatagATTTTCTTATTTATGCAATAAACAATTATTACTGGGTGACACAGTGGAATTGTGTATATAGATACTCACGCAAACACGCTGGAAACACTTAAATCCAATGCTTAAAGTCGACATCACGTGTATTAGCACAAAAAGTCacagaacatgttttattgacaAATTTGCATTGGGACGTTCCTTGTGAGTTTGCTAGTTGAGCTGCTTTGAGAGGAATTGGAACCTAAATTCTAATTTGCAGGTGGTCTTTTATGATTTTCAAAAGACATGGAACCAAATTCTGTAAGATATCTGCTATTATTTACCTGAAACCTTTGACTGCCATATCTAATCAATATAGCTCAAGAAAAGCAATGCTGCTCTCCAAAATCATTTGAGTTTTATTGCCTTGCAAAACCCAGAGTAAACAATCACTACATGACTATTTCTTAGTATTATTTGAAGGTGCAAACTATCTTACAGCatctattttaaagttttcatttttgtatgaGTTATGGGGATATATAGCTGAGCTGTAAAAGttgtgttttctgaaataattgtgAAGATTCAAAGCTGATTGGTTTTCTGACAGTTCAGAAGCGATTGTTGAAATCCACTGAAACGTTTTCTATGATGCTTGTAAGTAAGCGCTTTGGTACTTAGGGAAATGAACAAATGAAACTGATGTTCTAGTTTGTTCAGAAGAATACATGttacaatgacatttaaaaagcttgctgtaaaattatgcattattccattaattaaagattatattaatgaaaacaa

Function

GO:

id name namespace
GO:0003146 heart jogging biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0001947 heart looping biological_process
GO:0000166 nucleotide binding molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG:

id description
K04671 BMPR2; bone morphogenetic protein receptor type-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001334 True 6243 mRNA 0.49 11 25552444 25581376

Neighbor

gene id symbol gene type direction distance location
AMCG00001332 NA coding upstream 187148 25363893 ~ 25365296 (+)
AMCG00001328 NA coding upstream 249756 25299096 ~ 25302688 (+)
AMCG00001325 NA coding upstream 255586 25246376 ~ 25296858 (+)
AMCG00001330 NA coding upstream 387611 25150764 ~ 25164833 (+)
AMCG00001329 NA coding upstream 401688 25150297 ~ 25150756 (+)
AMCG00001335 NA coding downstream 48671 25630047 ~ 25636339 (+)
AMCG00001333 NA coding downstream 82489 25663865 ~ 25673767 (+)
AMCG00001338 NA coding downstream 137528 25718904 ~ 25725679 (+)
AMCG00001348 als2,LOC106574246 coding downstream 440605 26021981 ~ 26069510 (+)
AMCG00001350 NA coding downstream 494194 26075570 ~ 26097013 (+)
G130773 NA non-coding upstream 101586 25450516 ~ 25450858 (+)
G130757 NA non-coding upstream 154810 25382179 ~ 25397634 (+)
G130715 NA non-coding upstream 306290 25221616 ~ 25246154 (+)
G130712 NA non-coding upstream 335394 25215938 ~ 25217050 (+)
G130711 NA non-coding upstream 336709 25215225 ~ 25215735 (+)
G130789 NA non-coding downstream 966 25582342 ~ 25582606 (+)
G130792 NA non-coding downstream 51858 25633234 ~ 25633576 (+)
G130817 NA non-coding downstream 93841 25675217 ~ 25675482 (+)
G130839 nol5,nop58,LOC106575044,LOC106594422 non-coding downstream 146477 25727853 ~ 25729837 (+)
G130884 NA non-coding downstream 479772 26061148 ~ 26062693 (+)
AMCG00001331 NA other upstream 102134 25423687 ~ 25450310 (+)
AMCG00001315 NA other upstream 945972 24584179 ~ 24606472 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other upstream 1098059 24433793 ~ 24454385 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other upstream 1106211 24424565 ~ 24446233 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other upstream 1867323 23565151 ~ 23685121 (+)
AMCG00001337 sumo1 other downstream 154179 25735555 ~ 25749501 (+)
AMCG00001361 NA other downstream 1275223 26856599 ~ 26880797 (+)
AMCG00001365 NA other downstream 1322987 26904363 ~ 26954597 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_00324040_00344658 BMPR2, BMPR2B coding CI01000037 null 322308 ~ 344776 (+)