RNA id: AMCG00001334


Basic Information

Item Value
RNA id AMCG00001334
length 6243
RNA type mRNA
GC content 0.49
exon number 11
gene id AMCG00001334
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25552444 ~ 25581376 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGAGAAGCAATGCGTTTGATTCAATGTGCAGCCTGCCACAAGTCTTTCCTTTTGAGAATCGGCTTCCTCCGACTGTTTTCAATGGATTTCATCTGTCTGCTGCGGAAcagctggagctggaggagagaAATGGTGTTCTCCCCCTGCACTCACGCACTTATTCTTTAATAACCTGTTTCCTTTGCTTCCTTGCAGCTCCCAGACCCCTGTACCGAGAGGAGACCATTGTCATCGCCCTGGCGTCTGTCTCTGTAGTGGCAGTCCTCATCGTCGCACTTTTCTTTGGGTACAGGATGCTCACAGGAGACCGCAAACAAGGACTCCACAACATGGACATGATGGAAGCAGCCGCCTCGGAGCCCTCCCTCGACCTGGACAGCCTCAAACTGCTGGAGCTGATCGGGCGTGGCCGGTACGGCTCGGTGTACAAGGGCTGCCTGGATGAGCGCCCGGTGGCCGTCAAGGTCTTCAACTACACCAACCGGCAGAACTTCGTCAACGAGAGGAACATCTACCGCCTGCCCCTCATGGAGCACGACAACATCGCCCACTTCACCGTGGGGGACGAGCGGCTGACCTCTGATGGCCGCATGGAGTACCTGCTGACCTGGGGATATAGCTCGTACTCCCAGCCCTGGTTGGGAGCTGGTGTGGATCACGGGGGCCGAGCTGCGTCCCTGATCGCAGACAGTTTGTTTGACGCAGCTGTTGTGTTGGTTTTCCAGGGGTCCCTGTGCCGCTACCTCAGCCTGCAGTCCGGAGAGTGGGTGAGCTCCTGCCGCCTGGCGCACTCCGTCACCAGAGGACTGGCGTACCTGCACACCGAGCTGCTCAAAGGAGATCACTACAAGCCGGCCGTGTCTCATCGGGATCTGAACAGCCGCAACGTGCTGGTGAAGAACGACGGGACGTGCGTCATCAGCGACTTCGGCCTGTCCATGAAGTTGACGGGCAATAGGCTGGTGCGGCCAGGGGAGGAGGACAATGCTGCCATCAGTGAGGTGGGAACCATTCGCTACATGGCCCCTGAGGTGCTGGAGGGGGCGGTGAACCTGCGGGACTGCGAATCAGCCCTGAAGCAGGTGGACATGTACGCCCTGGGCCTCATCTACTGGGAGATCTTCATGAGGTGCACTGACCTCTTCCCAGGAGAGTCGGTGCCAGACTACCAGATGGCCTTCCAAGCCGAGGCGGGGAATCATCCCACCTTCGAGGACATGCAGGTGTTGGTGTCCCGGGAGAAACAGCGGCCTAAATTCCCAGAAGCCTGGAAAGAAAACAGCCTGGCGGTGCGCTCTCTGAAGGAGACCATGGAGGACTGTTGGGACCAGGATGCCGAGGCCAGGCTGACGGCTCAGTGCGCAGAGGAGAGGATGGCCGAGCTCATGGTCATCTGGGACCGCAACAAGTCTGTCAGCCCCACTGTCAACCCCATGTCCACGGCCATGCAGAACGAGAGGAACCTCTCGCACAGCCGCCGGGTGCCAAAAATCGGGCCATACCCCGACTATTCCTCTTCCTCCTACATCGAAGACCACGAGGGCATCGTCAAGAACATCTCCAGCGAGCTGTCAACTTCGGGCACGCCCTCTGTGGCAGGGGGGGGAAGCAGTGGTGGGGGTGAGAAGAACCGCAACTCCATCAACTATGAGCGGCAGCAGGCCCAGGCGCGCCTGCCCAGCCCAGAGACCAGTGTGACCAGCCTGTCCACTACTACCACAACCACCGCCGGCCTCACGCCCAACACAGTCATGACCACCATCTCAGAGTCGGGCTACCCCGACGACACAGGTCTGCTGCAGCCAGCGGGGCCTGCGCAGGTGTGCCTGCAGCTGACAGAGGAGGACCTGGAGACCACCAAGCTGGACCCCAAGGAGGTGGACAAGAACCTGAAGGAGAGCTCTGACGAGAACCTGATGGAGCACAGCATGAAACAGTTCAGCGGCCCAGACCCCCTCAGCACCAGCAGCTCCAGCCTGCTGTACCCGCTTATCAAGCTGGCAGCTGAGGTCACAGGGCAGCCCGACTTCGGCCAGGCCAGCGGCTCCTCAGGCGGCGGGGAGGTGCCGCCCATGTTCCCCCTGCCCAAGCAGCAGAACCTGCCCAAGAGGCCCACCAGCCTGCCACTCAACACCAAAAACCCCACGAACAAGGAGTCGCGGCTGAAATTCGGCAGCAAGCACAAGTCCAACCTGAAGCAGGTGGAGACCGGAGTGGCCAAAATGAACACCATTAATGCGGCTGAGCCCCACGTGGTGACAGTGACTAACAACGGGCAGAGCCGCGGGGGCCTGGCCAACGGCCATGCCGGCTCGTCTTCCTCGGCACAGCTGCAGTACGCCAGCGGCTCGGCGGCCGCGGCCGCCCCGGCTCACAGCTCGGCACTGCTGCAGGCGCAGTTCAGTGGGGAGGACAGCCGGCTCAACATCAACTCCAGCCCTGACGAGCACGAGCCCCTCCTGCGGCGCGAGCAGCAGGTCGGCCGGGAGGAGCGTCTGATGGAGCGCCTGGCGGACAGGAGGGACCACCGCGGCCTGGAGGCCGTCCGCACCAactccaacaacaacaacagcaacccCTGTCCCCCCACCGAGTGCCCCGCCGCCCCCGAGCCCCCCGCCGACACGCAGCTGCGGCAGCCCAAGCCCCGCAGAGCCGAGAGGCCCAACTCCCTGGACCTGTCCTGCGCCAGCACTGTGGACTGCACCATGCAGAGTGAATCGAGGGATGGCAAGGCGGGCTCTGGCGAGAAGATCAAGAAGCGTGTGAAGACACCCTACTCTCTGAAGAGGTGGCGCCCGTCCACCTGGGTGATCTCCACAGAGCCGGTGGACAGCGAGGTCAACAACAACAGCCAGCAGGCGGCCAGCCGCTCCAAATCCAGCACTGCCGTCTACCTGGTGGGCGGGGGCACAGCCACAGCAACCGTTCCCACGGATAACGGAATGACTTGCCTGTGAACTGTTGGCATTTGTTTCCCTTTCCACATTTCAATGtcacttgagaaaaaaaaaaaaagaaaaaaacgacaagaaaaaaaaattcaagcagcttaACTTTCCGCTCACTTATCCTTCAAAGAATTGCTTTAAATAGAATCCAGCTATGCAGCAAAATTGGCTTACAGATGCTTccattttggttgttttcctCCATTTCCACATTGTATGTTTGCTTGAAaggctgttttgttgttttttttttttgcactttttgtttttaatcatcttAATGGCACAGTCTGTCTCGTGTGACCacctgaaagaaagaaaaaaatatatagaaagtgGTCTTAAATGCTAAGCAGGAACGATAAAAGATGACAATGCATTGAATTACAATCAACAGACCAGTTTTATAATGTATCCATATATAAAatggtcttaaaaaaaaagagtggtCTTTAAGACAGGGTTGACTGCAATGactttgtttcactttttttgttaaatgtatgcaaaagtAGATTTCTATGTTCATGTATTCACGCGTGTAATATCTTTGTAttccttgtttttgtattatgttttgaaatgtgcaaTAGGCTTTAGCTTTGCAGTGCTTTcgtttcaatgtgtttttcgATATGTTTTTGCGGCAGTTTCTTAAGCAGTGCACTTACTTACAGTGGCAATCCTGCATCTGTCCAGTTCCCTTGGCTTGGGCCCTCCGTTCTGGCTTCCTGACAGGACACCGCGGCACTGAAGACAATCCTTTGCTTTCTCACAGAGTGGTTGAAAAACctgaggagggaaaaaaaaacacaacaaacaaaaaataaccgTGGGGGTTATTGTAACTTCTCTCCTTTTGAGTAACACCAAGCTGTGTTACTGGAGTCTGACAGAAGAAAATGAGAACAGCAACCAACCAAACTTAAATCATTCTGCTCGCAGTCGGGACGTTTAAGGTGCCGAAACAAACTGCGGCAGCTTGAAACTGCGTGTCTGCGAGACTGAATGTGACTTGTCTGCTTCAGTAATGTTGTGAAAGTGTTGACTCCTTTCCCATCTCTCTATGCAACTGAAACCCTAATGCTTGGAACATCAGCCTGATTGCCGTGTTTGTGCGCTCGTCTGCCAAGCCTGACTGGTTTTCTTCTTCACAACAAGCTGGtgcttttttcatgttttcgTGCATTCAGTTTTTTCCCCGTGTTCTCGGTATCGGAGGTTTGGCGACCAGTTGTTGGACTGTCCTTGAGGTTTTCCCTGAACGGCCATTAAAGGATGAAGGAGACTACCGACCTGTCAATCAGAACTCTAAACCATACAATGCAAGCTCTTAAAAACCCCACCCCCACAGTCTTTAGTTCTttcctggtttttgtttttctctgtaaaacatttttgtgttgtggTAATCGCTACAGAGGGAAGACAAAGACGCATTGTAAATCATCTTTTCTGGAATCTCAGCGACCATCTAAAAACTTCTGTCCTGTCAGTTTTGTTCTCCCTACTGTTTGTGTAACGTACCTAAGCTATGATTCTCCAACGTTGCCAGAAGGAGGTGGTTTCGAAACAATATTTTTGAGAGCCAAACTTTTAATTTtgatctttttaaaaaatattagtaGTATTTACAGTACACTACTCCTACAATGCATCTAACGTGTctcatattttattgtgtgtgataAGGCTATTACagcttaaaattatattatgtgCTGCGTTTGTATTGCATTCATTGGACTTGGCAGTTTTAGGTTTGCCATTTATCTTGGCGAATTTGAGCAGTTCTCTGATTTTGATTCTAAAATTCCACATATGCATCCTATTTAATGGGATGTAAGGCAAAaaagtggaaataaaatatcactgtccAAATTCCAATGTTTTAATCAGCCTGAAATGTTCCTTTTTCCCTGAATGATCCCTTCATTCAGTAGATTGTTTTCCCTGACACTCCTCTCTCCCAGTGAGTTAATGCGTCACTATTTTAGACTGTGTACTGCACTTCCTCACTATGCTAGATTAAGGAGCTGGGAGATCCCAGTTAGATACCTTGTTCAAccaaaaagcacatgtacagttAATACACATTTCCTTGGTTTAATTAGCAGTTACACAATTAGTGTAGATAAGCTTGTATATAATACAGTTGTGTTCtataatgcatatttatgcTTTTCCTGCAGTGGGCACATTGATTGGTTGGGGTCGTCTATGGCAGATTGCAGAAAGacttgcatgtatgtgtgtgttcgtgtgttacacacacacacatctagtGAACCCTTGAATTTAATAAGAATGATCAAAGCCCCCCCCCCATATTAGCAACATATTTTAAGAGCCAGGCTACAGTTTACTTAAGTTAGTATGGCATAAAGATTATATTAACTCCTCAACACTTGTAATGATTTGGTTTCTTATAGATGGAGAACTGATGAGTACATTACTCACACACCTTCAAGATCTAAcactcaaaatacattttaaataatattattgttaatatagATTTTCTTATTTATGCAATAAACAATTATTACTGGGTGACACAGTGGAATTGTGTATATAGATACTCACGCAAACACGCTGGAAACACTTAAATCCAATGCTTAAAGTCGACATCACGTGTATTAGCACAAAAAGTCacagaacatgttttattgacaAATTTGCATTGGGACGTTCCTTGTGAGTTTGCTAGTTGAGCTGCTTTGAGAGGAATTGGAACCTAAATTCTAATTTGCAGGTGGTCTTTTATGATTTTCAAAAGACATGGAACCAAATTCTGTAAGATATCTGCTATTATTTACCTGAAACCTTTGACTGCCATATCTAATCAATATAGCTCAAGAAAAGCAATGCTGCTCTCCAAAATCATTTGAGTTTTATTGCCTTGCAAAACCCAGAGTAAACAATCACTACATGACTATTTCTTAGTATTATTTGAAGGTGCAAACTATCTTACAGCatctattttaaagttttcatttttgtatgaGTTATGGGGATATATAGCTGAGCTGTAAAAGttgtgttttctgaaataattgtgAAGATTCAAAGCTGATTGGTTTTCTGACAGTTCAGAAGCGATTGTTGAAATCCACTGAAACGTTTTCTATGATGCTTGTAAGTAAGCGCTTTGGTACTTAGGGAAATGAACAAATGAAACTGATGTTCTAGTTTGTTCAGAAGAATACATGttacaatgacatttaaaaagcttgctgtaaaattatgcattattccattaattaaagattatattaatgaaaacaa

Function

GO:

id name namespace
GO:0003146 heart jogging biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0001947 heart looping biological_process
GO:0000166 nucleotide binding molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG:

id description
K04671 BMPR2; bone morphogenetic protein receptor type-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163896 lncRNA upstream 101586 25450516 ~ 25450858 (+) True G130773
TU163895 lncRNA upstream 102138 25449817 ~ 25450306 (+) False AMCG00001331
TU163875 lncRNA upstream 154810 25382179 ~ 25397634 (+) True G130757
TU163820 lncRNA upstream 306290 25221616 ~ 25246154 (+) True G130715
TU163815 lncRNA upstream 335394 25215938 ~ 25217050 (+) True G130712
TU163913 lncRNA downstream 966 25582342 ~ 25582606 (+) True G130789
TU163916 lncRNA downstream 51858 25633234 ~ 25633576 (+) True G130792
TU163941 lncRNA downstream 93841 25675217 ~ 25675482 (+) True G130817
TU163968 lncRNA downstream 146477 25727853 ~ 25729837 (+) True G130839
TU163974 lncRNA downstream 154179 25735555 ~ 25749501 (+) False AMCG00001337
AMCG00001331 mRNA upstream 102134 25423687 ~ 25450310 (+) True AMCG00001331
AMCG00001332 mRNA upstream 187148 25363893 ~ 25365296 (+) True AMCG00001332
AMCG00001328 mRNA upstream 249756 25299096 ~ 25302688 (+) True AMCG00001328
AMCG00001325 mRNA upstream 255586 25246376 ~ 25296858 (+) True AMCG00001325
AMCG00001330 mRNA upstream 387611 25150764 ~ 25164833 (+) True AMCG00001330
AMCG00001335 mRNA downstream 48671 25630047 ~ 25636339 (+) True AMCG00001335
AMCG00001333 mRNA downstream 82489 25663865 ~ 25673767 (+) True AMCG00001333
AMCG00001338 mRNA downstream 137528 25718904 ~ 25725679 (+) True AMCG00001338
AMCG00001337 mRNA downstream 157748 25739124 ~ 25749380 (+) True AMCG00001337
AMCG00001348 mRNA downstream 440605 26021981 ~ 26069510 (+) True AMCG00001348
TU163730 other upstream 960969 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 1098059 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 2385788 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 4275565 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 4473574 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 1275223 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 1370532 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00072834 False 4030 mRNA 0.53 13 NC_007120.7 12959760 ~ 13111163 (+)
grasscarp (Ctenopharyngodon idella) CI01000037_00324040_00344658.mRNA True 4904 mRNA 0.47 12 CI01000037 322308 ~ 344776 (+)