RNA id: AMCG00001331


Basic Information

Item Value
RNA id AMCG00001331
length 6762
RNA type mRNA
GC content 0.57
exon number 21
gene id AMCG00001331
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25423687 ~ 25450310 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGCCTTCCCTTGTGGAATTTTCCAGTTGAAGCCAGTAGACCTCATCAACTGGTCTCAACTGGAATTAACTGGAATTAACTGGTCTGCCCTGGTCACCAGTAGACTTACCAATTGGTCCCAACTGctgtctgtctctctggacccctctctctccctgcccctcAGGCACCGGCTGGACCATGAGCAGCGGGAGTCGCGGCGGAAGCTGCGGGAGAGccgggagagagagggcaggcaGGCGCTGCTGGTGACGAAGCTCCAGAGCAAGGTGTGTGAGTATCGTGCCCGCTGTcagcagctggagcagcaggtGATGAGTCGAGAGACTGAGCTACGCAGAAAAGAGATGTGGACTCGAGAGGAGCACAGCGACAGCCTGGAGGGCGCCCTCATCAGGttggaggaggagcagcagagGAGCTTAGGCCTTGCTGAGCTGAACTCTCTCCTGCGCAGTCAGCTCAACCAATTAGGCGAGGTGAATGAAGCCCTGAGGGAGGACCTGGAGAAGCTCACAGCTGATTGGACAAGAGCTGTAGAGGAAGTGGGGCAAAAAGAAGTGGAATggcaaaaagagagagaaCTGCTAACAGCCCACATTAGCGATGAGCACAATCGTCTGCTGTCTCTCTGGAAGGAGGTGGTGACTTTCCGGCGTCACTTTCAGACCATGAAGACTGCCACCGACCGGGATCTCTGGGAGCTGAGGGCCGACTTCTCACGCTTGTCAACCTCTCTGCTGATGAGCTGCAGCACCGTGAGCTCCAGTCCTCCCCTGGCCACCCTGCCCGCTCCCCAGGACCCCTCCATCTCCCTGCCGCCCCCCCTCACCCTGCAGGACCTCTCGGAGGAGCTGCGGGAGAAGGAACAGGAGGCCGCCGTGCTGCGCCTCCAAACACAGGCGGAGAGAGAGGATCTGAGGGCCAAAGTTGTCTCTAGACAGAAGGCTTATGGGAAAGCTGCTCCTTTCTCTTCACAAGAGAGTACAACAGAGGGGCTGACATTCCTGCTCGCTGCCATTGCAGAGGCTGAGAGTGCCCTCCAGTGGAAACACCAGGAACTGCAGGAAACAGAATTGTGTCTGAAAAAGGCCTTACTGGAGCGAGAGACTGAGTGCAAGTTATTGGAGCAGCGAATCACAGAGCTGGAACAGGAGGGGGAGGAGCTAAAGGCCAGGGTGGGCCGAGAAGAGCAGTTGCTGAGAGACACCCAAGAGTCACTCGAGAGCAAGAGGGCGGCTGTGGTCTCCCTGAAGAGCCAACTTGAGGAGTCGGAGCGACAGGCCGAGGCGGTGAGGAAGGAGAATGCGTACCTGaggatgcagagagagagggaggaggaggagaggcgagagatggagaaagaaaatgagaaatgGCTGCGGGCCCAGGAGCAGGAGAGCGTCCAGAGCAGCCAGCGGGAAGCTGGGAGGAGGCAGGAGCTGCTGGGCCTGAGGGAAGCCCTGGAGAGCGCCCAGCTGGACCGGACCCTggcccagagagagagcagcgaGCTGAGGGACGCCCTGTTCACGGCCCGGGAGTCTCTCCGCAACCTGTCGGTTTCACAGGACCAGCTGAAGAAGGACTTGGCAGACTCTCGCGACTCCCTGGAGAAGATGGCCGATCTGAATGAAGCACTGGCAGCAGACAAGAGGGACCTGAACGCACAGACTCTGCAGCTGGAGATGCAGCTGGCTAGTGTGCGCTCCCGACTGGAGGCGCTGGGATCCGAGAGCCTCTCCCTTCACCAGGAGCTCAAGACGGTGTCCCAGGAGGCGGCAGAACTCAGGTCCCAGAGGGCGCAGCACCAGGACTCCCTGCGACAAGCCACGGACAGGGAGAgtgagctggagagagaggccAGCAGACTGAGGGAGGAGCGGGAGAAAGACCTGGGCTGGCTGGAAGAGCTGTCTGGCCTGCATGGAGCGGCCTGCTCTGAGCTGCAGGGCCTGCGGGAGGAGCTAAGCAGGGCATCTGAGTGCCTGAGCCGCGccgagagagagaaggaggccGTGCTGCAGGAAGGAGAGAGGCTGGGGAGCAGCATGAGGGCGTCACACTGCGAGTCTCTGCAGCTCCAGCTCtccctgaccaatcagaagaaCTCCAGCCTTGAAATAGTGCAAGGTCAGCTGGAGGTTAAAGTTCAGATGCTGCTGCAGGCCAAGGAAGTCCTACAGGGGGAGATCCGGTGTCTGCGCACGGAGCTGCAGAGCGAAGTGGCCAGGCTGGAGCAGGAGAGGGCGGGGTGGCGGGAGGAGAGCGAGCAGAGCCAACGGGAGCAAGAGAACACAGGGGCTGAGATCGAGAGGCTCCTGCAGGCACTGGCCCAGGCGGAGGAGAGGCGGAgggtggaggtggaggagagGGAACGGGAGAGGGAGGGCTGGCAGCGAGAGAGGGAGGCGTTGAGCTCGGAGCTGGGGGAAAGGGATGGAGAGGTGGGGACACTGGGCCAGAGGGCCGAAGCTCTGGTACGGGAACTCGAGGAGCTGTCAGAGGTGCTGAGTGGGAGAGAGGCTGAGATCGAGGAGCTCCAGAGCAAGGAAGCAGCTGAGCGTAGGGCCAAGGAGGAGAAACTCCAGGGGATCAGTGAAGAGGCGAGGAGGTGGAGAGCCAGGGTGGAGGCTCtcgagaaggagagagagggactgtgCCGCCaggtggaggaaggggaggCCCTGAGGGAACGGGCTcgggagctggagctggggagGGATGAGCTGGCGGCGGAGCTGAGGGAGAAGGAGTTGGCTCTGAAGGACAAGGAGGGAAACATTAGGCGCTTAGAGACCAGGGTGCAGAtgctggagggggagagagatgatCTAAGCTCGGTGCTGAGAGGCAGGGAGGGCCTGGAGGGGAGGGTGGCAGCACTGGAGCGCCTGAACTCCGAGctgagggacagggagaggctGAGTCAGAGGGCgctgagagaggaggaagagaaagggcgacggggggaggaagagagggagagactcaGGAGCTcctggagggagagggaggaaagaCTAAGGGGGGATGTGCTGCAAAGGGATGTAGAGATAGAAAGATTGACGAGTAGAATCGGGGCCttagagagagagtgggaggagACCAGGGTGCAAAAGGACGAGCTCAGGAGGGAAGATGAGAAGAAGGCGGCTCATTtgagggacagagaggaggaggtggagaggaTGAGGGACACTCTACGCAGAGGGGAGGAAGAGGCAGCTGCCAAGTTCCAGCAAAGTGAGGGCAAGGTGAGGCGGCTGGAGGCGAGAGTACAGGAGCTGGAGACACTCAAAGAGGTGCTCAGCGGCCAGCTTAGAGAGGTGCAGGtgacacgagagagagagagggcagagaaAGAAGAACAGCTGAGGGAGACAACCCAGGAGCTTAGGAATGCTCAGAGAGAGATCCAGACACTGAGTGAAAGACTGCAGGAGAGcaacagggagagggagagggtgttACAGCAGGctgagaagagggagagggaggtggagagTTGGAAAGAGATGGCAGAGGAAAGGGTGAGGGAGGTGGGTAAGATGGTGCAGCGTCTCCAGGAAAAGGAAGAAGAGGTGGAAAGGCTGAAAGATAGGGCAGAGGAAAGCAGTGGGGAGAGGGAGCAAATGGCACAATGCCTCGGAGAAAGGGAGCAGGAGGTGAGGCAGTTGCAGGACAGGGTGGAGGCAACGGAGGAGGAGCGGGAAGACTTTGCGTTTCggttgagagagagggacaagGAAATGGAGAGACTGGAGGCTCGAGTTGGGGAGCTTCAGCAGGGACAGCGGGCCTTGTTGGAGGAGAAAGGGGGGCAGGTGAAGCTTCTGGGGGACCACGTGCAGGATCTGGACAATGAAAGGGAACGCCTATCTACAGAACTGAAGACAATGGAGCAGGAGGTGGTGGCTCTGAGAGGCGCACTGGACCAAGCACAGCAAGAGATAGAGATGAGAAGCGGCTCTTTGAGGCTGCGAGAAGAAGAGATCCAGGATATAAAGACGTGCAGGGAGGCCACGTTAGCCCAGTTAGATGGTCTGAGGGTGATGGTGGAGGAGgtgaagaaggagagagaccaAGCGAGAGCAGAAGTCAGGGACAAGGAGGGAGAGAACCAGCAGATGCGAGAGGGGCTGAAGTCCAGCATTAAAGAGATGGGGACACTGAAAGAGCTTTTGGAGGAGAGCCACCGGGAAGGGGAGAAGTTGAGGGCCATCTTGAAAGACAAGACCGAGGAGTtggtgagggggagggaggagcaTGTGAGAGTGACTAAGGGGGAGATGGAGGAGCTGAGGAGTAGGATCAAGATTGTAGAGCAAGAGAGGCAGGAACTGAGTTGTCAGCTTGGAAGCTTGATGATTGAGAGGGAACGTtgggaggaggagagcagagaaACCAGAACTCTGAGAGAAAGACTGGAGGATCTATATAGGGCTGAGCTGAAGGAGAGGGATGCAGAAGTAGCCAGCatgagggagagggaaggggcATTGGAGAAGCAGAGGGAAGAATGGAGTTTGGTGATGGCAGAAAGAGACCGAGAGATCACCAACCTGAGGGAGAGAGCCAGGGaacaggagagagagtgggCAGCGCTCAGAGAAGAGGAGAGTCGGGAGATGGAGAGACTGAAGCAGGGGGTGGAGACACTGGGGAGGGAAGGGTCAGAAAAACTGCAGAGGGTGGAGAGGGAGGCGGcagcagagagggagaaagttAGGGAGCGCTACCTGGAGGAGCAGCAACTGCGGAGAGAGGGGGAGCAGGAGGCGGAGAGGCTGAGGGGGGCAGTAAAGGAGTGGGAGAGGCAGGCTGAGCGGCTGTCAGACACCCTGAAGGAAAGGGATGGTGAAGCGGTGGAGCTGAAGGAGAAGGCggaggagagcgagagagagcaggagaggctGTGGGCGCTGCTGcagcagagagacagggagataGAAAGATTGAGGGAGCGAGTTGAGGGACTGGAGAGGGCAGCAGAGGAGGGGGCCAGGCGGGAAACCATTCTGAGGGAGGAAAGGGAAGGGGAGAGGCGCCAACTGTGGGACACGCAGAGGAAAGAAGACGAGATGAGGGACAGAGAAATGCGACCCTTGAGGGATGCGGCAGAGAGAACGGCCAAGGCTGGGAGTAAAGCAGCAGAGCAGGAGCAAGAGGAGAAGCTGAGAAACGAGCTGAGGGCGAGAGACGGGGAGATTGTGCTGCTGATGGAGAGACTGGGGGCTCTGGAGAGGGAACGGGAAGACTTTCTCTCCAGCGCTGGAGCTGAGACCCAGACACTGGGGTGGCGGCTGTCCTCCTTGCTGGTGGAAAAGGAAGATGCCGTCCACACTCTGCAGCAGAGGGAGGTGGAGGTGCAAGTGCTGAAGGAGCGAGCTGAGGAGCTGGTGAGAGATCGAGCTCGGGTTCAGGGGGCCCTGGAGAGCACCGAGGCAGCTCTCATTGAGCAGCGGGAGCGGGTCAGAGAGCTGGAGCGAGGCATCAGGACTTGTCAGGAAGAGAGGGACATGGCAGTGTCTCGCCTCCTCAAGGCCGAGAAGGAGACTTCACCAGCACAGAGCGCAGGCATCCAGGAGAGGTTCAGCACCATGCACAGAGCCGTGGCACAGCTGGAGCATGACAAGCAACAGCTGGAAGCAGAGAAGAAACATCTGGAACGGCGCTCAGAGCGGCTGAGGATAGAGCGAGGACAGCTGAGGGAGACCCTGACTCAGGTAGAGGAGGAGCGGGTGAAACTGCGCCACCAGCTGTCCAATTCAGACTCCGCCTATAGGAGTCACAccaggtcaaagGCGGAGAGCAAAGAAGAGGTGGAGATGGAGAGGCTGAGAGCTCGGGTCAAGGAGCTGGAGGAACAGGTGCACTATCTCCGGCTCACGTTGGCCGTCGACTTCCGAGAAAGAGCGGAGTTCATCGAGCGCTCTTCCAGGAACAGCCAGTGGTTGCTGTCCCTGCGCCAGGACCTCTCCGATTCGCTGAGCCTGGTATCACAGAAGACACTCCCCTCGGTGCTGGAGGCCGAGACGCTGCGATTGGACAGGACCCTGAGGGAGGAGGAGCTGCGATTGTCTTTCAGCCAGTCATgaaaaaggaagggaaaaaaaagaccagaCACATTTAAATTTGCTTTTATGAAGGAAGAACAAAAGCTGATATTGTTCAACACTCGGGAAGGGTAACCCAGGGAGTTTCCTTATTGGTGTATCCCATTGTGCTTATCTCCTCTGTTGTAATTAATGCAATTGTTAATATTTTGCAGCCTCTCCAAGAAGTTTAAACCGAGGTCAAGaggaaatcatttaaaatggctCTAAGATACCCTGACAGAGTGGCactaaatcacaaattaaagaTACCAGGACGTTTTCCTGGCAGTGTGTGATCAGCTACCTTTGTTAGTAGAAAATTCTAATTATAAGGCCAGTATGCTGTAGTTATTTTAGGCTTAAGATAACATTAGGCATTGAGTGAGTGACTGGTGTTGAttggtaatttaaaaaaggagaatGGAGGTGGAACAAAATTCAGTTCCTTTTGCAGATGCATTGCAAAGAGTGAGGATTCTAACAGATAAGTGATGGTTTTTAACAGCCATTAGCCCTTAAAGGAAAATCTTTCATAAATTGATAGGATGTATATAAACTGCCATATTTTCtcttgtattaatattaatgtcaaatgtacagtttgtttatatttaaagctgtaacactaatttatatatatataaaatgtgtgtgtgt

Function

GO: NA

KEGG:

id description
K16464 CEP250, CNAP1; centrosomal protein CEP250

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163875 lncRNA upstream 26053 25382179 ~ 25397634 (+) True G130757
TU163820 lncRNA upstream 177533 25221616 ~ 25246154 (+) True G130715
TU163815 lncRNA upstream 206637 25215938 ~ 25217050 (+) True G130712
TU163814 lncRNA upstream 207952 25215225 ~ 25215735 (+) True G130711
TU163808 lncRNA upstream 226696 25196382 ~ 25196991 (+) True G130705
TU163896 lncRNA downstream 206 25450516 ~ 25450858 (+) True G130773
TU163913 lncRNA downstream 132032 25582342 ~ 25582606 (+) True G130789
TU163916 lncRNA downstream 182924 25633234 ~ 25633576 (+) True G130792
TU163941 lncRNA downstream 224907 25675217 ~ 25675482 (+) True G130817
TU163968 lncRNA downstream 277543 25727853 ~ 25729837 (+) True G130839
AMCG00001332 mRNA upstream 58391 25363893 ~ 25365296 (+) True AMCG00001332
AMCG00001328 mRNA upstream 120999 25299096 ~ 25302688 (+) True AMCG00001328
AMCG00001325 mRNA upstream 126829 25246376 ~ 25296858 (+) True AMCG00001325
AMCG00001330 mRNA upstream 258854 25150764 ~ 25164833 (+) True AMCG00001330
AMCG00001329 mRNA upstream 272931 25150297 ~ 25150756 (+) True AMCG00001329
AMCG00001334 mRNA downstream 102134 25552444 ~ 25581376 (+) True AMCG00001334
AMCG00001335 mRNA downstream 179737 25630047 ~ 25636339 (+) True AMCG00001335
AMCG00001333 mRNA downstream 213555 25663865 ~ 25673767 (+) True AMCG00001333
AMCG00001338 mRNA downstream 268594 25718904 ~ 25725679 (+) True AMCG00001338
AMCG00001337 mRNA downstream 288814 25739124 ~ 25749380 (+) True AMCG00001337
TU163730 other upstream 832212 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 969302 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 2257031 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 4146808 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 4344817 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 1406289 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 1501598 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile