RNA id: AMCG00001333


Basic Information

Item Value
RNA id AMCG00001333
length 6750
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00001333
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25663865 ~ 25673767 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATATCGCTCCCATTCCAAAGAGCGTTCTGATTCCTATTCCAATTTCCAAGTCGACTGTGTCCCGATTCAGGAACAGCGTGGAGGGCCTTAACCAGGAGATCGAGCGCATCATCATCAAGGAGACCGGGGACAGAGATGAGCAGCTCGTTCCCCAGGACATCCCAGACGGGCACCGCGCCCCACCCCCCCTGCCCCAGCGCAGCAGCAGCACCCGCAGCATCGACACGCAGACCCCGTCCGGGGCTGACAGgggcagcaacagcagcagccgcTCACAGTCCGTCTCGCCCACCTTCTTCACCATCTCCACTGAGGGCAGCGGGGAGAGCCCCTGCTCGGCCGACGACCTGCTCACCGATGGCAGGGAAAAAGactGCGGCCCCAGCTCTCCCCTGCCCAAGTATGCCTCGTCGCCCAAGCCCAACAACAGCTACATGTTCAAGCGGGAGCCTCCTGAGGGATGCGAGAGAGTGAAGGTCTTCGAGGAGACGCTGCCCCGGCAGCTGACCGAGATCCCGCAGTTCTACGGTCCCGACAAGAACAAGGTGAACTTCATCCCCAAGAGCGGCTCTGCCTTCTGCCTAGTCAGCATCCTCAAACCTCTGCTCACCAAACCGGACTTGACGTTCAAGAGCTCTGCCCACAGCCTGGCTGTCACCTCGGCACTCGCCCCCACGGTCCTGCCGCCCCTCGCCATGGCAGCGCTGCCCAGCAACGGAGAGCAGGAGCGCGTGTCCCGGGGGACCAGCACGGCCAGCCAACAGCCCTCCCTCCCCAGGCACATCGAGGAGCCGGAGAGCTAGGCCTCCAGAGGCCGACCAGACCTTTCATCAGCATTCACCTCCTCTCCAGACATGACGCACATTACTCCAACGATCGAACACCTCTGGCCCTGCTGCTCCACAGATGCTTGCAATTGGTTCATCTAGTGTTGTGGGGCTGGGCTAGAGGAAACACAGCAGGGGGCTTTCCCAAAGGGTGGCGTCCACTTCATGACAGCTTTGCTGGGGGTGGCTCCCTGCTGTGGACCCTGACAAACAACAGCGGGGAATTACGAAACCAAACTGAATCTATGATTGGCCACCCTTTGAATTCGTCTGCCCCAGGATGTTGGCCAGGGACCTGTATTTCCTCACCGTGTGCAGTGCAGCCTTTCACAGATCTGATTTTGGTGGCCGGATGGCTACAGTcttaaaaatgttcaaatatatatgtatttaaaaaagaaaaaaaaaactactacgGCTCTGGGAGACAGAGAACCTGGGTTCAGCACACACAAATGaatcttatttttattactgaTTATTACTAGGGCATTCATTGGATCTGTTTGGTTTTGGTCTTGAACTGCATACATGCATCTCTGATAACTGCTCTGAACGTGCAGCTCAGCCAAGGGACAGCTGGTAGGAGGACTTTCAGCTGTAACACCAGGgtgaaaggaagaaacaaacGTGCCTGCCCTTGTTTTGTTCTAACCAGTCTGGTTCACCCACACATCTGGGTACCAGTTTCCTTTCTGCAGAGAGAAGTTTCACAGCGCTGCGCCCAACGCCTTTGCTTTGCTGTGTTTGTTACACAACAATTACAGTGGAGTCGCTGTCATTGCTGGGAGCTTCTAATGTTTACCGGCTTTCCAACTCAGCCCAAATGACTGTCCTGTGGGTTTCTCAAACTGCAGCGAAAGGAGGGAGCAAGTGAAGGTTTGACAAGGACTTGAGTCTAATTGTGGGGTATAAATGTGTGTCCTGTTCTGTATGTCTTTCGGCTGAACTGAAAGCGATGCACTCCTTGACACAACGGATTAAACATTTCCTGCATTTCACTATGACTATCCTCCCATCCTGTCCTCTTTGGCATCACGTGTAGCTGATCCCCGCCTCACTCTAGGTGTCTTACATTCTCTCAAATCAGGGATCTCGTTTTCATGAACAGAAGGCCAAGAAACCGCAGTGGCCGACGGTAAAAGTGCTTAGCCTGAGAACGGACACTTCCTTCCCGTGAGAATTTCCATCTTTCTGGGAATGAAAAGAGATGATCTGCTTCTCAAAGTACCTCTCAAAActtcaaactgaaatgtatgcctttcattttcaaacgTCTCAAAAGAAGTAGCCTATCTAAAGtgttttaattactattttattaacAGGTGTCGCAAATGAACTCTTCAAGTGTGTGTAAGCCGCTCTATTTTAAGGTTCGCCGCAGTGGGTTGCCGTTCTGGTAGTCGGGTCAACCCAGGGCAGTCAGGAATATGGACCAAAACCTGGAATGGTATTTCCTAACAgaagtaaattacttttttttattatttactaagCCTTTAGATATTGTGAtttagagagaaagagattaaaatataatattattccCAATAGTGGTATCTTTTAACCAAGTACCTAATTTCACACACAACTGTTTTCTAGTTTCAAATGATGGAAGTGGAGATTTCAAACACCTGCTGCATGAAGGGTTGCCAGCAATATTACATGAAAAACTGGAAATTTCAGTGAGAAAGAACATCAACAAATGGTACTGTTGATTGAGAACTATTGCTGAAGttaaatgtaatgctttaattTCTTTAGTTCTCTGTAAATCCTCAAGTGAGTTAAGCAGTCTTATCCTCTGAAACAAACCTAGTTTAAGCATAGCTCTTATGCGGTTCAGTGTAAATCCGTTGGCAGGacaaattgaaataatgttatacaGTTTAACATTCTATTAGAACAAAGTCTTGCTTGTCCACAAACCAGTTAACATTCAGCATAGGAACGGTTGAGATGTACGAAAGGAAGAGGGGTCTGAAACGGGAGGCGGGGAGTTTGGCCAGGGGTTCAGAGCACATGAATTGACAATGTGTTCATATGattgtgtgctctgtgtctctgtacacGCCAGGACCATGCAGCCCGGCCCGTCTCTCCTCGACTCGCATCTCTGACTCCTATACTTCCACTCTTCTTCCATTCTCCAGTTTCATACAGTTACTGAAGGTTGTCTTTTCCAGACAGGACAGTGCAATCGCTTTGACACATGTGTGCTTTACATGAGTCAAAAACttaacaaattactttaaaCTGAAATCATGATTATTTCATACCGCTTTGTAATAGAgtcgttgacagattttattctGAAGTGTTCATTGAATCGCAACACAAGTCTGTTATATAGAAATATCATGAATAAAGTGAGACCCTCTATATGTAGGTTACCAGCATATCAGTATTTCTAATAATCTCACGAGtcttctggtgttttttttccagcatcccagtgagaaaatgttatttaaaaatagatcttcatactcaatttaaattaaactatacaaTACACTGCTGAGGATCCATAAATGCCTGATCTATATACAACCTGATTaactgttttgcttttattttgcctcCCTGgacatagaaaaatatatctgtTAACTGTAAGCTTCACATTGCTAACTGCCCCCCACACCCTGTTTCTCTGGTTTCTCTTCTGGGAGATAGAGATCACCTTTCTTACCAAAGCTGCCTTCCACACCTCCATGTTTGGAGAGAATGGCCATCTGTGGTTTCAGCCCAATAATTTGAGTCCTGCACATCGTACTGGTCATATGTCTGCCACAACATCAGCCTTTGTCCCATTGGCTCGGCCATCAAATGTAACACACAGGCCTTTACATAGAGGATCGCTCTGTAGCTTCAGAAGACACTAGCCTCTGTTTATTGTACATTGTACCGTATACTGCTGTAGTTGTAATGAATCAGTCGTCACAGCCTTCATCTGGTCATTTTCAGTGTAGTTATGTATTGGTGATATCTTTTTTTCAGGTCAGAGAAAATAGTCATGATCCCAGTCGATTGAACCGAGTTAAGGTTGTGTTGGACTTCACTCCATAGAACATTGtgtcaaatgaagggtgtgtaTAATATGGACTATAATCTCCCACATTTTGAGGATCATACTTTACCCCACACACCATCCCCACTTTTCAGACCGTCTACACTTGAACTGGAGTCACGCCCGGCCACAGGCTGCTTTATAGTCTGTAATGTTTGTTCTTGTTCTAGAAGTGAGTCACAGTAGTAATCTCCTGATCACCGCGGTCATCCTGCCAATGATTAAAGGTTTTCATGATGGCTGCAAAGGAATCTGACATTTAAAGCATGCATTAGGAGCTGAATCTTATGAGCGAACATAATTTGTGGGGGTTTTCAGAATCATTGCTGTAATTAGGCAAAGGCTGCACTGCGCTTACATTCTTTAAATTCACCCTGTAAAATTAGTGGCGTACATCTGACaagaatatgtatatttttaaacatttcagcagataatggagggggaaaaaaaatcagaatagCAATCCAGATGATTGTGTTCATTCTAGCCAGCTTTTTTGAGATGTGGGATCACGCACGATTCTTGACTGATGTTTCTGTATTTGACGGGggacatttttttgtataaagcAATATGCTCAAACTTTCAtaggattttaaataaacatcaagAGACACAATTGAGAGCTGATCTTATAGGTTGACGTATCTTTTTgaggttaaaaaatatatatatttttgtagccATCAAATAGAGCATGGTAGCATTCACAAAATAGTGGGCTTTTTAAAAAGTTAGAAATGTGTGTCTCTACAGGCATTACTCAAATAAAgagactgtttttgttttaaaaaatgcaatcagtAAGTAATTTGCTTATAGTAGAGTTGAGAAGGGGGTGTAGTCACATGGTCCCTTCACTCGAGCACGGTAGGATATCTGAGATTTCAGAATACATGCAGTTGGCCTTGCCATGTAccgtttttatttatgaaagtgTAATGTTAAGTAGGGTTAAGTATGAGAGATTAAACGAGAGCTTGAGATCAATCAACTGTACTGTCTTGTGAATGAGACAATTGGAGCATATTGTGGTGTCGCAATTAGTAACACCAGTGGTGCAGGTTCATTTTGGGAAAGAAAACACCCCCAgcctgttattttgtttgttctcatttaaaagagcaaaaaaaaaaaaaacacctgatcttaaatgtttcattttgaaacgcatagaagcttgatttggatttTGAAATGAAAGTTGATCATGTTGATTCTGTTTTTAGAGCTGCAGGTATTTCAGGTTGTATTGTTAAGATGTTAAGATGTCTTTGGCTACCTGCCATCAAAAACAAAGCCAGTCATCGATTCAAAGATGGCTCTCAGTTCGAGGCCTTCTATATTTAACATGTCGCTGTGTGCTAAACCTCACATGGCATACTTGGAAGCCAGCATgagagccagccagccagtctGCCGTGCTCTGCTGGGGTAGTTTGCTTGTTGAGGCCGTCCTGAGTGAAAGCAGGGCAGATAGTGTCAAATGTGGATCCAAGATGTGACTGTAACCCAGAGGACGCTGGTCTTTCTGCATCAAGGGTTGCCCACTGCTGTGCTACGAGTGGAGTTTACCGTTTACCATGAAATAACTTCCTGTCAAATGCGTTCCTAGAACGAATcaatgaatggaaaaaataattatctttgCTATAGTTTAAAAAGCTTTTGCACAATATAGAAAGTATTTTGAGATGCAAAGAATGGTTAACCTGTTGAAACCAAAGCACGGTTATGAAATTGGATCAGCCTGTCCATTCAGTCTAAAATAGTACAAGACACACACCCTGAATTCACTGTCTTTCATGTCATGGATGGGACTCGGTATTGTGTAGTAGCATCCTTGTCTATTAAAGGTGAGACGGATCTGGACGGGATGCTGGTGAACCCGGCTCCTGTTCTCCTGCACCAGGTAGATGGAGAGTGTTAGAGGGACGTGATGTCATCGAATCGTAAGCGTTGAAGTGGGTGGGACTGTGTCCGACTGTGTCACGTCACAGTGGAGGCTGCAGTCGTTTGAATTCTCAGCTGTGGAGAGCACCTGTCTATCCGGGGATGGCGCGCTGGTTTTGAACTGGGGACACTGGGTATAAGTGTTCGAttagctgtttctgtttctcgatcatcattattacaattattagtaAGCTATTATGTTGTGCTTTAAGAACACAGACTTGTACTTGAATATCCCTGCGCTCTTTCTGTCCCGATTCCTGTGCAGACTCGGGCTTTCTTGTTTTCCATGCTCACAAAGCGTCTGCTAATGTTTCGGAAAAGAACTACAAAAGTTCTTCACGTTTTTTACAGAAAAGGCCTGCTTCTTTATTTCGTGTGACTGCTAGTTCTGTTCTCAGGAATGTATAAAATTTAACAGgaaattcaaacattttgatcaaatatatgtacaatactCTATTTAGAGAGATTTTATCAactgtatctatctatgtatctctatatatagatattaaacCTTCAAGCAGGTCTCTTTGAAATAAAAGCCTcttttgcatgttttcaaaATGGTAAAGGAAAATTAATCTCATTTGTTAGGATGTGcagaatataatacaaatatagctattttctaaaacacattttctaacGTAGGAATTTGTGTAACTGGCTTagatcatttttttctctttatgaaAGCAGACTCGGTCACTGTACACATCGGACAGACTGTTAAAAATGACTGTAAATggattactgtttttttttccttttccccttttcttttggattaattttgaattattttaccaGCTCCTCTCCTGATATGAACCTGGCTATGTCTGTAtttgaaaacagaataaaattgCACTTGCTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163916 lncRNA upstream 30289 25633234 ~ 25633576 (+) True G130792
TU163913 lncRNA upstream 81259 25582342 ~ 25582606 (+) True G130789
TU163896 lncRNA upstream 213007 25450516 ~ 25450858 (+) True G130773
TU163895 lncRNA upstream 213559 25449817 ~ 25450306 (+) False AMCG00001331
TU163875 lncRNA upstream 266231 25382179 ~ 25397634 (+) True G130757
TU163941 lncRNA downstream 1450 25675217 ~ 25675482 (+) True G130817
TU163968 lncRNA downstream 54086 25727853 ~ 25729837 (+) True G130839
TU163974 lncRNA downstream 61788 25735555 ~ 25749501 (+) False AMCG00001337
TU164023 lncRNA downstream 387381 26061148 ~ 26062693 (+) True G130884
TU164097 lncRNA downstream 622940 26296707 ~ 26335290 (+) True G130948
AMCG00001335 mRNA upstream 27526 25630047 ~ 25636339 (+) True AMCG00001335
AMCG00001334 mRNA upstream 82489 25552444 ~ 25581376 (+) True AMCG00001334
AMCG00001331 mRNA upstream 213555 25423687 ~ 25450310 (+) True AMCG00001331
AMCG00001332 mRNA upstream 298569 25363893 ~ 25365296 (+) True AMCG00001332
AMCG00001328 mRNA upstream 361177 25299096 ~ 25302688 (+) True AMCG00001328
AMCG00001338 mRNA downstream 45137 25718904 ~ 25725679 (+) True AMCG00001338
AMCG00001337 mRNA downstream 65357 25739124 ~ 25749380 (+) True AMCG00001337
AMCG00001348 mRNA downstream 348214 26021981 ~ 26069510 (+) True AMCG00001348
AMCG00001350 mRNA downstream 401803 26075570 ~ 26097013 (+) True AMCG00001350
AMCG00001349 mRNA downstream 426511 26100278 ~ 26117478 (+) True AMCG00001349
TU163730 other upstream 1072390 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 1209480 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 2497209 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 4386986 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 4584995 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 1182832 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 1278141 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062470 False 1931 mRNA 0.52 8 NC_007117.7 12853655 ~ 12865827 (+)