RNA id: AMCG00001335



Basic Information


Item Value
RNA id AMCG00001335
length 306
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00001335
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25630047 ~ 25636339 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCTATGAAGCAGAAGCAGAGGCATAAACTCAATCCCAGCACTCCCAGCGCCTGGGCAGAAGAATGTCCCGAAAAGAAGAAAGGCTCCCACAAGCGCTCGGCTTCCTGGGGCAGTACCGACCAGCTTAAAGAGATTGCAAAGTTGCGCCAGCAGCTCCAGCGCAGCAAGCACAGCAGCAGACACCACCGAGACAAAGACCGGCAGTCTCCTTTCCATGGCAACCACGCGGCTATCAACCAATCGCAGGTGAGCACGCGCAGCCCCGCTCAGGGTGTCTTCTTACCTAAAGTCATGATGACCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU163913 lncRNA upstream 47441 25582342 ~ 25582606 (+) True G130789
TU163896 lncRNA upstream 179189 25450516 ~ 25450858 (+) True G130773
TU163895 lncRNA upstream 179741 25449817 ~ 25450306 (+) False AMCG00001331
TU163875 lncRNA upstream 232413 25382179 ~ 25397634 (+) True G130757
TU163820 lncRNA upstream 383893 25221616 ~ 25246154 (+) True G130715
TU163941 lncRNA downstream 38878 25675217 ~ 25675482 (+) True G130817
TU163968 lncRNA downstream 91514 25727853 ~ 25729837 (+) True G130839
TU163974 lncRNA downstream 99216 25735555 ~ 25749501 (+) False AMCG00001337
TU164023 lncRNA downstream 424809 26061148 ~ 26062693 (+) True G130884
TU164097 lncRNA downstream 660368 26296707 ~ 26335290 (+) True G130948
AMCG00001334 mRNA upstream 48671 25552444 ~ 25581376 (+) True AMCG00001334
AMCG00001331 mRNA upstream 179737 25423687 ~ 25450310 (+) True AMCG00001331
AMCG00001332 mRNA upstream 264751 25363893 ~ 25365296 (+) True AMCG00001332
AMCG00001328 mRNA upstream 327359 25299096 ~ 25302688 (+) True AMCG00001328
AMCG00001325 mRNA upstream 333189 25246376 ~ 25296858 (+) True AMCG00001325
AMCG00001333 mRNA downstream 27526 25663865 ~ 25673767 (+) True AMCG00001333
AMCG00001338 mRNA downstream 82565 25718904 ~ 25725679 (+) True AMCG00001338
AMCG00001337 mRNA downstream 102785 25739124 ~ 25749380 (+) True AMCG00001337
AMCG00001348 mRNA downstream 385642 26021981 ~ 26069510 (+) True AMCG00001348
AMCG00001350 mRNA downstream 439231 26075570 ~ 26097013 (+) True AMCG00001350
TU163730 other upstream 1038572 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 1175662 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 2463391 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 4353168 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 4551177 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 1220260 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 1315569 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile