RNA id: TU163974


Basic Information

Item Value
RNA id TU163974
length 4487
lncRNA type sense_over
GC content 0.39
exon number 5
gene id AMCG00001337
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25735555 ~ 25749501 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGATTGCAATGAGGTCAGCgtctctgtgtttttgtgggGGTTTGTAGAAAAGCGGAGACAGCAGgaatacacaataatacaccATCGAAATCCCTGTTTTATCCGCTGCCAGGCCCACAGTATCGACCATGTCTGATACGGAGACCAAGCCTTCAAGTCAGGATTCGGGAGATAAGAAAGATGGAGAATACATCAAACTCAAGGTCATTGGCCAGGACAACAGTGAAATTCACTTCAAAGTGAAGATGACAACGCATCTAAAGAAGTTAAAGGAATCCTACTGTGTCAGACAGGGAGTCCCTATGAATTCTCTTAGGTTTCTCTTTGAAGGACAGAGAATTGCGGACAACCAAACTCCAAAAGAGCTGGGCATGGAAGACGAGGATGTTATTGAAGTTTATCAGGAACAGACCGGAGGACTTTGGAATAATTAGACTTTCTATCTTTTTTgcttctattttgtttttgtttttttaattattatttttttgtgttcttgttaGTAAAATGGCCGATACCATGAAACTTAGATGATACTCACCAGGGCTCCCAGTAGCTATGAGACGGGCTGGACAGTGCGTTTTCGATCTGCCTCCTGCGGCTCTTCTCTCTGGACAGTACAGTGGTCGGAGAGATAGTGGGGGTGGAGATGGCTGCATGTCGTGATTGATGAAGGGGAAAGTGCGTTTAAGGACACGTATTTTTTACAGGCCCTTCAGTGTTTTCAAAAACTACAAGGTGTCGGGTGTGTTGCTAAGCACTTCTTTTACGATGCCTATTGCAGTTGAGCTTTGTGAGGCATTCCCCCATCTTTCACTCTCCTTAGAGCTTCTATTAATGCCTGGTTTTCCAGTTGTTGTAAAGAGCTAGCACTGTTGAAAGCCGTATCAGTGTAGGTTAGTAAACTTCTCTTCACACTGTGCATACTTTGACACATCACCCTGACTGAAATTCAGTTCCtaaagcatttttaatgttcccCTTTTAAACAGCACAATTCCAGGTATTCGACAACTTTAATTTAGGTGTggaattcattcattcattcattcatttattcattcattcagttttaCCTGTAGGTCTCATAACTTTTGTGAATACTATAGTATACATAATTGAAAGTGTGTTGGTATCTGAATATGGCAATTGTTGACTCATTTAGAAAACCCATAGGCTAGCATTGAGAAGACCAGAAAAGACAGTTTATTAAAACTCATCGCAGGAAATAGAAGTTTGCCAAGATGTTGCTAAAGTACTAGTTTGCTGTACTTGAAGAGCTGGCTTCCATAGTAACAGTGCAGATCTCAATTAGAGGCTTTTGTGCAATTTAAAAGggagcttttttttattttaaatttgtaaaaaaccaaaccaaatctTTATAATCACATATGTAAACATCCTGTTAAAATAGAATACCAAGAATCTGAAAGctttaacaaataaaacctaaaattaAGGTACATTTTATCCAATAgtgtaattacttattttttcctttggAAGATGTAGGTTATTTGAGTCAGGTTTGGTCAGTTCTTGAATTTTTTAAAGTCCAAACTTCTCTGTCTGCTCACGGAAAACCAGGCAAGCAGCGGTTAATGTTGCTGCATTGTTAGGCTTTGCGTAGCTAGATAGCAGTGCAACAGGTGTACGAGTAATAAATAATCGGACCGTCATGCAAGCAAAAGCTCACCCCGGTCCTGAGAAAACAGTGTTTTAACTGTTCAGTACCTGCTCAGAATGAAAGATTTCAAGAACTGCAGCAGCACTGCTATTGATGTATTTTAGAGAAGCCCGTTTTCGATTGTGAAATTTGTAGAATTCAGAGAGAATCGTGTCTGTTGTATTGAAGAAGAccagtgttgcagtgtgtgtttgttgagtGTAGTGTAGTTTCTTTAACTCACGAAGGTAGTTTGCTCATGTGGCCCAAAAACGCCTTGAAAATGTGCTCACAGGAAAAACTGATTTTGAGCCACAGATTTAGGGTCTGGTCCATGCTGGATGTTCTGAGTAATTGGGTGCCTCGGTATAAGGACATCTGCAGACAGTCTCATCCATTGCTTTGTATATAAACTGCAGCAAAACTGTCATGAATCACTCATTGTGCCCATAGATAGTTTCATAGTAGCACCTTGATGGATGCTAGTGGTGTGAAGACCTTAGTCACCTGTAGGCAAGGAGCCCTATTTTTTGAGCCCATGAGGACCATGGATTTGGTCTTTCTGCACAGAGGAGGCTGTAGACTGTTGCCAAAGCATCCATTTCATGGGAATGATAAAAAACTGGATTTAATGGAATATATCTCCCCATAAATTGTTTAGAGTTTTTCATAGAAACAAGTCTGTTTCAGTTAACTGCATTATTAGTTTAAAGGAATCTGCTGTAAGACTGGATTGTTGCTAATGAATTAAAAAGGTAATTGAGATCAGTTAACATGGATTTGGGGGCTACCCACACAAAAAATACCCCTTTTCTTAGAGTGTTCAGTGTTTCAAATTCATAATAGCTTTATTTCACAAGGTAATGTTAAGCTGTTTCTGGACAGCTGGGGTGGCATTGCAGGTGGGTGCCACGTGAGGCCAGGGCCCATCTGCTCCTTACAAGCGTCACCCACCGGACTTAGCGCAGTGATTTGTGGGCGTTGTTTGCTTCCAATGTGAAATGTAGAGCAATCAGATTTGCGGGGGTGTTTGAACCCACATTAGGAGGCAGGTTCTCCTTTATGGACTGATCGCTTTAGAGAATACAGAGGGGTGATGCGGAGTGCAAATTCAGCCAAGTCCCACGTGTGAAATGTGAATAACACCGGATGTGGTTCCTGAGTAGTGTTTGCTTTCTCGACTATAATGCACAACAGCACAGGAATGCTCTCCTGAGTACGTGATGCTGATAACAGTTTGCTTTCATTTCCAGTACTAGGAAATCTGGGGGTCACCTCTAAAGTGCTTTTCGAGCAGCATCAGGTCGGCCtactttatgtatttctttgtcCCATTGTCACATCACTGAACTTGATGGAGCGCAGCGTAGGTCCTGGAAAGCAGCTGACTCTACATGTGAGTGCATTTTTATCCCCCCAAGTCATTAAACACGGGGTTGTCTGGATTCCTTCGAAGCTTGTAGGATCAGATTGTTGGAGCCGGTCCAATTTTGCTAGATTTTTGAATAGAGTGAACCTAAAACATAGTCCTATTAAATGCATGTAGTGCTTAACTAACACATCTAGATGCCCACTGTCATGGTTCAAGAGCACTGAGGCCACTGGTAGCCATCAGGGAAGTGGCATGAGCCCACGTTGTTCTGCAATGTCCGTTCGTACTGGCCCACATCTGCCTGTCATCAACGTCTCTTGAGATTTGCAAAGCATTTTGTCATTTGAAGATCTGAATATTGCTTTATCTGTGCACTGCAATTAAGAACAGGACACTTTTTCTccaaaatgaatgcatacagCTCAGAGCAGCCCCAAGACTACAGTGCTCTGGTTTCAGCAAGTTGGAATGAAAGCACACAGACGTCATTGTTAAAATTTCAACCAGGCTCTCCCTGCATCTCAAAGGCTTTTAAATGGTATTTGACGAAAGACGTTTGTATAGACAATAAGCAAGTCATTGTACAGCAGTTGTTTAGTAGAATTAGACAGCCATGGCTCTAAAGATGCAGAATGTACTGAAAGTGAAATCTAAATGATTGATTaccaatttataatttaattgaaaatgtgattGGACAACTTgtgtattctatatatatatatatatatatataaatacacattacattgtttttgtaatttcatttaGCCTGGCACATAACCCTGACAGTATGTTTCACAATAGAAGAGATCTTGCACAATTTTAAATAGCTGTcccttttattatatattttaatactcgTATTTGCTCTTATTATTTTTGACTTGTTGCCCAATCTCTGTGTTGTGCaagctgtgttttatgttgCCAAAgctaattgaaaatgttttttttgtttttgttaagctATGGGAGCtcctgttttgtattaattattgcaGATCTTAAATTTCAACCTTGAGCAATCAATCACTTTGGATGGTTTCAGCCTGTAAgatccccccctttttttttctttttttttttttaaataaaatcggTTACAAAAGACCTTTCATAATCTCTCTAGTTATTTTTGGTTAATTTTGATGTTGAAATGTTAAGGAGAAATACCAAGACTATTAATGGTTCACTTCGGGTGCATCGTTACATGGGTTTAATACTATATCAGTTTAGATCTGGATTTAACTGATTGGTCGGTCCTAATGAAGGGGAATTGACAGAGTGTAgtctgatcttttttttttttttttttttttttccaagacggatttttatttataaatcgGTAATCAAAACATGCTCATTTTAGGAGATGCCATGTTATTGGACAGAGTGGtgtttgaaaaagaaagcaagcatgtatggaatttatttaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163968 lncRNA upstream 5718 25727853 ~ 25729837 (+) True G130839
TU163941 lncRNA upstream 60073 25675217 ~ 25675482 (+) True G130817
TU163916 lncRNA upstream 101979 25633234 ~ 25633576 (+) True G130792
TU163913 lncRNA upstream 152949 25582342 ~ 25582606 (+) True G130789
TU163896 lncRNA upstream 284697 25450516 ~ 25450858 (+) True G130773
TU164023 lncRNA downstream 311647 26061148 ~ 26062693 (+) True G130884
TU164097 lncRNA downstream 547206 26296707 ~ 26335290 (+) True G130948
TU164185 lncRNA downstream 1021379 26770880 ~ 26771161 (+) True G131017
TU164189 lncRNA downstream 1043770 26793271 ~ 26793553 (+) True G131021
TU164243 lncRNA downstream 1229274 26978775 ~ 26980289 (+) True G131072
AMCG00001338 mRNA upstream 9876 25718904 ~ 25725679 (+) True AMCG00001338
AMCG00001333 mRNA upstream 61788 25663865 ~ 25673767 (+) True AMCG00001333
AMCG00001335 mRNA upstream 99216 25630047 ~ 25636339 (+) True AMCG00001335
AMCG00001334 mRNA upstream 154179 25552444 ~ 25581376 (+) True AMCG00001334
AMCG00001331 mRNA upstream 285245 25423687 ~ 25450310 (+) True AMCG00001331
AMCG00001348 mRNA downstream 272480 26021981 ~ 26069510 (+) True AMCG00001348
AMCG00001350 mRNA downstream 326069 26075570 ~ 26097013 (+) True AMCG00001350
AMCG00001349 mRNA downstream 350777 26100278 ~ 26117478 (+) True AMCG00001349
AMCG00001351 mRNA downstream 373342 26122843 ~ 26140826 (+) True AMCG00001351
AMCG00001352 mRNA downstream 438388 26187889 ~ 26189870 (+) True AMCG00001352
TU163730 other upstream 1144080 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 1281170 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 2568899 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 4458676 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 4656685 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 1107098 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 1202407 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000024_03682769_03686417.mRNA True 1338 mRNA 0.39 6 CI01000024 3681848 ~ 3686417 (-)