RNA id: TU163814



Basic Information


Item Value
RNA id TU163814
length 511
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G130711
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25215225 ~ 25215735 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGTGACGTATAACAAGCTAAAGGGActaattttattcatatttctacATCATGTACATTTGATCAGAGTATTCATAACGCCTCATTGAAGACGATATACAAACTGATCAACCCGAGCATGTTCAGACAGGGCATGCTTTGCTCAGTCCTCTCCATCACGGGAATCCTGCACCCCAGTAGAGCCGCTGTTTTCACAATCCAGTCGTTTTCACCACTGTTCTTACTGCCTTCTCCACTGATAACTGCAAACTCAGTTTCTGATTTTCACTTCATTTCTAGCCTTGCAGTAATTCCTAATGGAGAGCTAAACTAATTTAGATAATCATTATAGCTAGCTcagcagtttttaaaattacaacCTGAGAGGTAGAGGCGAGATTAAATactttggaaacatttaaattctgtgtgtccagtttgaAGTAAGTTGAATTTATCGTTTTGTTAGTATAGCACAATTGCTGGGTGCAAatgtatggaagcatatagaggacttaaatcaaatgtaaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU163808 lncRNA upstream 18234 25196382 ~ 25196991 (+) True G130705
TU163798 lncRNA upstream 89146 25123594 ~ 25126079 (+) True G130695
TU163795 lncRNA upstream 128327 25086661 ~ 25086898 (+) True G130692
TU163792 lncRNA upstream 158247 25056621 ~ 25056978 (+) True G130689
TU163787 lncRNA upstream 192176 25022679 ~ 25023049 (+) True G130684
TU163815 lncRNA downstream 203 25215938 ~ 25217050 (+) True G130712
TU163820 lncRNA downstream 5881 25221616 ~ 25246154 (+) True G130715
TU163875 lncRNA downstream 166444 25382179 ~ 25397634 (+) True G130757
TU163895 lncRNA downstream 234082 25449817 ~ 25450306 (+) False AMCG00001331
TU163896 lncRNA downstream 234781 25450516 ~ 25450858 (+) True G130773
AMCG00001330 mRNA upstream 50392 25150764 ~ 25164833 (+) True AMCG00001330
AMCG00001329 mRNA upstream 64469 25150297 ~ 25150756 (+) True AMCG00001329
AMCG00001324 mRNA upstream 69169 25119636 ~ 25146056 (+) True AMCG00001324
AMCG00001322 mRNA upstream 170413 25029903 ~ 25044812 (+) True AMCG00001322
AMCG00001319 mRNA upstream 353520 24702643 ~ 24861705 (+) True AMCG00001319
AMCG00001325 mRNA downstream 30641 25246376 ~ 25296858 (+) True AMCG00001325
AMCG00001328 mRNA downstream 83361 25299096 ~ 25302688 (+) True AMCG00001328
AMCG00001332 mRNA downstream 148158 25363893 ~ 25365296 (+) True AMCG00001332
AMCG00001331 mRNA downstream 207952 25423687 ~ 25450310 (+) True AMCG00001331
AMCG00001334 mRNA downstream 336709 25552444 ~ 25581376 (+) True AMCG00001334
TU163730 other upstream 623750 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 760840 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 2048569 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 3938346 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 4136355 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 1640864 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 1736173 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile