G170013


Basic Information

Item Value
gene id G170013
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 24921542 ~ 24924642 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU230198
GTGTAACACCAGACAGATAGGGGTGACGCTTGCCgaataaaaggtaaagactggtttatttacagagccgTAAACAGGATAACACAACCAGATAACAGATTGAACAGAACTCACAGTATAAACAGAAGACGTAGTACAGGAAACAGTCCAAGATCCGAAGCCAGAAAGACAATCCGATAATACAACAAATCCGATAAGGGCgaagacaaaaggcaaaatccgtAATACAGGAAAAAGGGTCATAACAAAAAGGCAGTCAGAAAAGGGTTTGGAAaaacgctcagtacgcaacatgagtcgacaatacctcgcaagGAACCAATGCTAACAGaaccctatatatacaaaacatagaaccggaacaacttagaacacaggtgagtctgaACGGGGGAGCGTgacgcgattgggtgaaggtgagcggctGACAGTGACGTCATCACCAGTGGGttcatgggaaatggagttcgggAGTGT
>TU230199
GTGTAACACCAGACAGATAGGGGTGACGCTTGCCgaataaaaggtaaagactggtttatttacagagccgTAAACAGGATAACACAACCAGATAACAGATTGAACAGAACTCACAGTATAAACAGAAGACGTAGTACAGGAAACAGTCCAAGATCCGAAGCCAGAAAGACAATCCGATAATACAACAAATCCGATAAGGGCgaagacaaaaggcaaaatccgtAATACAGGAAAAAGGGTCATAACAAAAAGGCAGTCAGAAAAGGGTTTGGAAaaacgctcagtacgcaacatgagtcgacaatacctcgcaagGAACCAATGCTAACAGaaccctatatatacaaaacatagaaccggaacaacttagaacacaggtgagtctgaACGGGGGAGCGTgacgcgattgggtgaaggtgagcggctGACAGTGACGTCATCACCAGTGGGttcatgggaaatggagttcgggAGTGT
>TU230200
GTGTAACACCAGACAGATAGGGGTGACGCTTGCCgaataaaaggtaaagactggtttatttacagagccgTAAACAGGATAACACAACCAGATAACAGATTGAACAGAACTCACAGTATAAACAGAAGACGTAGTACAGGAAACAGTCCAAGATCCGAAGCCAGAAAGACAATCCGATAATACAACAAATCCGATAAGGGCgaagacaaaaggcaaaatccgtAATACAGGAAAAAGGGTCATAACAAAAAGGCAGTCAGAAAAGGGTTTGGAAaaacgctcagtacgcaacatgagtcgacaatacctcgcaagGAACCAATGCTAACAGaaccctatatatacaaaacatagaaccggaacaacttagaacacaggtgagtctgaACGGGGGAGCGTgacgcgattgggtgaaggtgagcggctGACAGTGACGTCATCACCAGTGGGttcatgggaaatggagttcgggAGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230198 True 477 lncRNA 0.45 2 24921542 24924642
TU230199 False 477 lncRNA 0.45 2 24921542 24924642
TU230200 False 477 lncRNA 0.45 2 24921542 24924642

Neighbor

gene id symbol gene type direction distance location
arhgap15 arhgap15 coding downstream 722585 24110733 ~ 24198957 (-)
LOC103024947 LOC108266290,LOC108435066,LOC107714355,LOC107601612,LOC107657493 coding downstream 1354697 23095230 ~ 23566845 (-)
LOC103024627 ttn,LOC108435065,LOC107657509,LOC107714399 coding downstream 1456026 23313716 ~ 23465516 (-)
LOC111194931 ttnb,LOC108435066,LOC107714355,LOC107601612,LOC107716993 coding downstream 1621506 23241340 ~ 23300036 (-)
LOC103024581 NA coding downstream 2362160 22512903 ~ 22559382 (-)
LOC111188175 NA coding upstream 552285 25476927 ~ 25489657 (-)
LOC111194961 NA coding upstream 566719 25491361 ~ 25495739 (-)
LOC103035913 LOC108430488,LOC108266232 coding upstream 760425 25685067 ~ 25720774 (-)
LOC103035604 NA coding upstream 807172 25731814 ~ 25754591 (-)
LOC111194933 NA coding upstream 849684 25774326 ~ 25781001 (-)
G170009 NA non-coding downstream 17866 24903455 ~ 24903676 (-)
G170004 NA non-coding downstream 38254 24883026 ~ 24883288 (-)
G169999 NA non-coding downstream 150372 24770966 ~ 24771170 (-)
G169997 NA non-coding downstream 155302 24765730 ~ 24766240 (-)
G169989 NA non-coding downstream 273648 24647546 ~ 24647894 (-)
G170015 NA non-coding upstream 19720 24944362 ~ 24944623 (-)
G170025 NA non-coding upstream 290089 25214731 ~ 25287612 (-)
G170038 NA non-coding upstream 461761 25386403 ~ 25386715 (-)
G170042 NA non-coding upstream 463448 25388090 ~ 25388466 (-)
G170045 NA non-coding upstream 501144 25425786 ~ 25426195 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other downstream 568634 24307650 ~ 24352908 (-)
G169567 NA other downstream 2026110 22894768 ~ 22895432 (-)
man1a2 man1a2,LOC107668846,LOC107658234,LOC107724469 other downstream 2445270 22338439 ~ 22476272 (-)
G169286 NA other downstream 3098504 21822713 ~ 21823038 (-)
cryl1 cryl1,LOC107712274,LOC107668879 other downstream 3255419 21648617 ~ 21666123 (-)
LOC111194864 NA other upstream 577298 25501940 ~ 25509416 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other upstream 873868 25798510 ~ 25905616 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other upstream 1301815 26226457 ~ 26252266 (-)
LOC111194963 NA other upstream 2975549 27900191 ~ 27902899 (-)
G170854 NA other upstream 3761408 28686050 ~ 28687679 (-)

Expression


Co-expression Network