RNA id: XM_043259208.1


Basic Information

Item Value
RNA id XM_043259208.1
length 2647
RNA type mRNA
GC content 0.53
exon number 16
gene id porb
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 7128335 ~ 7150841 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGTGCTCAAGTGAGCAGCGGCGCTCCTCGTAACGATGGCAGACTCACAGGCCGACCGCGAGCTGATGGAGGAGGACGAGCCCTTCTTCAGTAACCTGGACATCTTCCTCTTCTCGCTCATCGCTGGCCTGCTCATCTATTGGCTGATCTTCCGCAAAAAAGCTGAGCCCATCCCGGACTTCAAAAAACTGGAGTCGACGCCTCAAACATCCAGAGAAACcagttttattgacaaaatgaagaaaacgGGCAAGAATATCGTGGTGTTTTACGGCTCACAGACGGGCACGGCTGAAGAGTTTGCCAACAGACTCGCAAAAGATGCTCATCGCTACGGGATGAAGGGAATGGCGGCGGATCCAGAGGAGTACGACTTGAGCGAGCTCTCCCGTCTGAGCGAGATCGAGAACTCCATAGCCATCTTCTGCATGGCCACGTACGGAGAGGGAGACCCGACCGATAACGCTCAGGACTTCTACGACTGGTTACAGGAGGCAGATGCTGACTTCAGCGGCGTTAAATATACGGTGTTTGCGCTGGGAAATAAGACTTACGAGCACTATAATGCCACAGGAAAGTATGTGGACAAGAGACTGGCTGAGCTGGGAGCACAGAGGATCTTTGACCTGGGAATGGGAGACGATGACGGGAATCTCGAGGAGGACTTCGTGTCGTGGAGGGAACAGTTCTGGCCGGCTGTGTGCGAACACTTCGGGGTCGAAGCGACGGGAGAGGAATCCAGCATCCGTCAGTATGAGCTGAAGGTACACGGCGATCTGAACATGAATAAGATCTACTCCGGAGAGCTGGGTCGCCTCAAGAGCTTCGAGAACCAGAAGCCGCCCTTCGATTCGAAGAACCCCTTCCTGGCTCCGGTCACCATGAACCGCAAGCTCAATAAGGCCGGAGACAGACACCTGATGCACCTGGAGCTGGACATCACTGGCTCCAAAATCAGGTATGAATCAGGAGACCACGTGGCCGTGTATCCCATCAATGACAGCGTCATAGTCAGCCGCATCGGCGAGCTCCTCCAGGTGGACCTGGACACGGTCATCTCGCTCAACAACCTGGACGAGGAGTCCAATAAGAAGCATCCGTTCCCCTGCCCGACCACGTACCGCACCGCGCTGACGCACTACCTGGACGTCACCAATCCTCCGCGCACAAACGTGCTTTACGAGATGGCGCAGTACGCCACTGACCCCAAAGATCAGGAGAACATGAGGAAGATGGCCTCGTCCTCGTCTGAGGGCAAAGCGCTGTACCAGAGCTGGGTGCTGGACTCGTGTAGGAACATCTTGGCGATTCTGGAGGATCTTCCGTCTCTGCGGCCGCCCATCGATCACCTCTGTGAGCTCCTGCCTCGACTCCAGGCGCGCTACTACTCCATCGCGTCCTCCTCCAAGGTTCATCCCAACAGCATCCACATCTGTGCTGTAGTGGTGGAGTACGAGACCAAGACGGGTCGGGTCAACAAAGGAGTCGCCACTAATTGGCTGAAGAACAAGATGCCAACCGACAACGGACACAAGGCCACGGTGCCCATGTACATCCGGAAGTCTCAGTTCCGCCTGCCCTTCAAGTCCATGAACCCCGTGGTCATGATCGGCCCGGGCACCGGCATCGCCCCCTTCATGGGCTTCATTCAGGAGCGCGGCTGGCTCAGAGAGCAAGGCAAGGATGTTGGAGACACGGTGTTGTACTATGGCTGCCGTTACAAGAACCAGGACTTCCTGTACCAAGAGGACCTGGAGGAGTTTGAGAAGACTGGGGTTCTGACGGCGCTCAACGTGGCTTTCTCCAGAGACCAGGCAGAGAAGGTGTATGTGCAGCACCTGCTGAAGAAGAACAAGGAGGCCGTCTGGAGGCTGGTTCACACAGACAACGCTCACATCTACATCTGCGGGGACGCGCGTAACATGGCCCGAGACGTCCAGAACGCCTTCTACGAGATCGCAGAGGAGCTGGGAGGAATGAGCCGCGCTCAGGCCGTGGACTACATCAAGAAGCTCATGACTAAAGGACGTTACTCGCAGGACGTCTGGAGCTAAGCCAGCTCGCCTGCTTCCCCTTCTGTACATTCCTGATGTGTCCGTCACTGGCACGCGCGACCTCGTTCTAAAATATCACACCGCGGTAGAGCAAGAAATCCTGTGTAGAATCGTGATCTTATCCTACTAATCTAATACACATGCATGAAACTTTATAATCAAAGATAGGCTCATTTTTAGCATCCTACAAGCGGAGCTGGATCAAGCGGTACTTTGTAAGCACGAAGAGACTGGAGCTCTGAAAGTGGTTTTAAACATGCAAGAAACACGATTCCTGGAGGAGTGCGAGACGTCTTAAACATCACGACATTTCACTCTGAAGAAAAAGCATCtgaatgtctgtgtttttcttattactattattattattattattattatggctgAATGTGAATGTTAGCTCATTTCAACTGGATGACCCTCacagatttcatttttcttGAAGTTGAACCGTATTCATTTCTCATCATGTCATAATTTCTCGTAATCTCTATGTATATGCTGAGACTTTTCTGGAAGCTCTAGTGCCTTATTTACGGTCTTGTTTGCGTTAGCAGAGGACCAGCGCTGCTGCTGAAAAGAGTTTactatt

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005829 cytosol cellular_component
GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0003958 NADPH-hemoprotein reductase activity molecular_function
GO:0010181 FMN binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153959 lncRNA downstream 30268 7042394 ~ 7098067 (-) False G104252
TU153961 lncRNA downstream 42803 7042394 ~ 7085532 (-) True G104252
TU154033 lncRNA downstream 89143 7037726 ~ 7039192 (-) True G104314
TU154011 lncRNA downstream 91505 6806292 ~ 7036830 (-) True G104294
TU154424 lncRNA upstream 339381 7490106 ~ 7490776 (-) True G104570
TU154431 lncRNA upstream 346261 7496986 ~ 7497259 (-) True G104572
TU154447 lncRNA upstream 359409 7510134 ~ 7513305 (-) True G104585
TU154452 lncRNA upstream 373101 7523826 ~ 7524108 (-) True G104589
TU154458 lncRNA upstream 395231 7545956 ~ 7547059 (-) True G104595
XM_043259216.1 mRNA downstream 2198 7120062 ~ 7126137 (-) False taf15
XM_043259217.1 mRNA downstream 2198 7120062 ~ 7126137 (-) False taf15
XM_043259215.1 mRNA downstream 2199 7120062 ~ 7126136 (-) True taf15
XM_043259220.1 mRNA downstream 2226 7120062 ~ 7126109 (-) False taf15
XM_043259219.1 mRNA downstream 2227 7120062 ~ 7126108 (-) False taf15
XM_043258642.1 mRNA upstream 9611 7160336 ~ 7233359 (-) False dock10
XM_043258641.1 mRNA upstream 9611 7160336 ~ 7233358 (-) True dock10
XM_043258648.1 mRNA upstream 9611 7160336 ~ 7233355 (-) False dock10
XM_043258645.1 mRNA upstream 9611 7160336 ~ 7217445 (-) False dock10
XM_043258646.1 mRNA upstream 9611 7160336 ~ 7217445 (-) False dock10
TU154060 other downstream 9049 7114426 ~ 7119286 (-) False mmp28
TU153584 other downstream 981818 6146173 ~ 6146517 (-) True G104011
TU153427 other downstream 1378996 5744532 ~ 5749339 (-) False pgm2l1
TU153319 other downstream 1689388 5438048 ~ 5438947 (-) True G103825
TU152826 other downstream 3311593 3816062 ~ 3816742 (-) True G103449
TU154467 other upstream 419121 7569846 ~ 7572090 (-) True G104603
TU154509 other upstream 488919 7639644 ~ 7640339 (-) False G104628
TU154511 other upstream 488919 7639644 ~ 7640339 (-) False G104628
TU154597 other upstream 807111 7957836 ~ 7958231 (-) True G104695
XR_006252682.1 other upstream 894097 8044822 ~ 8050710 (-) False nipsnap2

Expression Profile