RNA id: XM_043259220.1


Basic Information

Item Value
RNA id XM_043259220.1
length 1813
RNA type mRNA
GC content 0.53
exon number 15
gene id taf15
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 7120062 ~ 7126137 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAAGAAGTCTGCAGTGCGTGTTTCGCTCCTGCCgggtttttaatttctttattttggaatAGGTggtctttcattttaattccttCAGAAAGATGGCCTCGGATTCAGGCTACGGTCAGCCTGGCGCTCAACAAAGCTACGGATCTTACGGTGGATCCCAGGGCTATCAAGGAGGACAGCAGGGGTATGGTCAGGGTAACGGTAGCGGCTCTTACGGTGGGCAAACTTACGGAGGATATGGACAATCTGGTGGAGAGAGCTATGGCCAGTCGACTCAGGGTTACTCCTCTGGTGGTTACGGGCAGCAGCAGCAACCTCCACAACAACAACCACaaccacagcagcagcagccgccGCCGCAGCAAAGCTATGACAGCTACGGTCAGCAGGGATCAGAGTCCTCGTCCAGTTATGGTGATAAGTCGTATGGACAGCCGAGATCTTACGGGCAGCAGTCGGGAGGAGGTGCTGGCGGAGCGGCGTACGGTCAGTCCGGTGGCTCGTACGGAGGCTCTCAAGGTGATAGCCGGAGGTTTGGCGATGACGGAGGCTCGGACAGGTCGGAGGGTTACAGGGGCAGAGGTCGTGGGGGCTTCGATCGTGGCGGTTATGACCGTGGAGGCTATGACAGAGGGGGCCGTGGCCCACCCTCCGGTATGGGgacCCAGAGAGTACGGGCAAAAGGATGATGGAGATGGCGATCAGGATAACTCGGACAACAACACCATCTTTGTCCAAGGTCTCAGTGAAGACGTCACCACTGATGAAGTGGGTGACTTCTTCAAACAGATCGGTATCATTAAGGTCAATAAGAAGACCGGCAAACCTATGATCAATCTGTACACTGATAAAGCCACCGGACGACTGAAGGGTGAAGCCACCGTGTCCTTTGACGATCCTCCCTCAGCCAAAGCTGCCATTGACTGGTTTGACGGGAAAGAGTTCAACGGAAAGCCCATCAAGGTGTCGTTTGCCACCAGAAGAGCTGAGTTCACCCAGCGAGGAGGCGGCGGTGGAGGTGGACGAGGACGCGGCGGTTTTCGAGGCAGAGGGGGAGGCTTTGGTGGAGGTCCCTCATTTGATGTCAAGGGTGGAGACTGGCCTTGTCCCAACAGCTCTTGTGGCAACATGAACTTTGCTAGAAGATACGAATGCAACAGGTGTGGAACGCCAAAGCCAGAAGGAGAAAGCTTTGGAGATGATCGTGGCGGGCGAGGCGGCTACGGAGGAGACCGCGGGGACCGTGGAGGCTTCAGAGGAggccgaggaggaggaggcggctTCAGGGGAGGAGACCGCGGAGGATACGGAGGGGGAGGATACAAGATGGGTGGAAGGGGTGACCACAGAGAGGAGAGACGAGGCCGGCCGTACTGAAGCCATTCCAGACCTGTTTATTGTGGGGGTGGGGTGAGAGGGTACGGGGAGAGGTTTGTGTCTGCAATCCTTTCTGTTGCATGAGCATATACTGTCTGAAACGAGCAGTTTTTCCCATAAATGTTGAATCTACTGTGAGGAGCCGAGTAACGGGATGATTTTGATCTCTGCAGCTCTGTGCAGCTTCAGTCCTGTAGGAAAGTGGCAGCACTGGCCACAGATCAGCTTTAAAGGGTCATTTTGCTCTGGGTGAAGGGGAGGGGCcagatgttatttttgttactttttaatttccTGACTTGTTGAATCCGGCATTTAGTGTGATAGATTTGTGAGATGcttattgttttgtaaaaatcaaTCAACACAAACTGTTTTACTTGTTTCggtttttgattttcttttgcaaaaaatattaaacacccTTTGATCTta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153959 lncRNA downstream 21995 7042394 ~ 7098067 (-) False G104252
TU153961 lncRNA downstream 34530 7042394 ~ 7085532 (-) True G104252
TU154033 lncRNA downstream 80870 7037726 ~ 7039192 (-) True G104314
TU154011 lncRNA downstream 83232 6806292 ~ 7036830 (-) True G104294
TU154424 lncRNA upstream 363997 7490106 ~ 7490776 (-) True G104570
TU154431 lncRNA upstream 370877 7496986 ~ 7497259 (-) True G104572
TU154447 lncRNA upstream 384025 7510134 ~ 7513305 (-) True G104585
TU154452 lncRNA upstream 397717 7523826 ~ 7524108 (-) True G104589
TU154458 lncRNA upstream 419847 7545956 ~ 7547059 (-) True G104595
XM_043259221.1 mRNA downstream 835 7111256 ~ 7119227 (-) True mmp28
XM_043258796.1 mRNA downstream 45804 7062700 ~ 7074258 (-) False LOC122358868
XM_043258795.1 mRNA downstream 45804 7062700 ~ 7074258 (-) True LOC122358868
XM_043258563.1 mRNA downstream 125878 6985330 ~ 6994184 (-) True LOC122358727
XM_043258564.1 mRNA downstream 260271 6841945 ~ 6859791 (-) True LOC122358728
XM_043259207.1 mRNA upstream 2226 7128335 ~ 7150841 (-) True porb
XM_043259208.1 mRNA upstream 2226 7128335 ~ 7150725 (-) False porb
XM_043259210.1 mRNA upstream 2226 7128335 ~ 7150596 (-) False porb
XM_043259211.1 mRNA upstream 2226 7128335 ~ 7141600 (-) False porb
XM_043258642.1 mRNA upstream 34227 7160336 ~ 7233359 (-) False dock10
TU154060 other downstream 776 7114426 ~ 7119286 (-) False mmp28
TU153584 other downstream 973545 6146173 ~ 6146517 (-) True G104011
TU153427 other downstream 1370723 5744532 ~ 5749339 (-) False pgm2l1
TU153319 other downstream 1681115 5438048 ~ 5438947 (-) True G103825
TU152826 other downstream 3303320 3816062 ~ 3816742 (-) True G103449
TU154467 other upstream 443737 7569846 ~ 7572090 (-) True G104603
TU154509 other upstream 513535 7639644 ~ 7640339 (-) False G104628
TU154511 other upstream 513535 7639644 ~ 7640339 (-) False G104628
TU154597 other upstream 831727 7957836 ~ 7958231 (-) True G104695
XR_006252682.1 other upstream 918713 8044822 ~ 8050710 (-) False nipsnap2

Expression Profile